/CNV_evaluation

Primary LanguageR

CNV_evaluation

1. integrate the CNARA algorithm to the pipeline

see http://github.com/baudisgroup/CNARA/cnara_tuto.html for R dependencies

2. add parameters, e.g. skewness, kurtosis

3. evaluate output parameters and adjust segmentation parameters based on evaluation

4. re-segmentation with DNAcopy

segmentation algorithms require packages 'genlasso'