qiyifei1

alphafold

Open source code for AlphaFold.

cog_stanford_alpaca

Code and documentation to train Stanford's Alpaca models, and generate the data.

ddpm-ipa-protein-generation

Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequence Generation with Equivariant Denoising Diffusion Probabilistic Models"

ddpm-proteins

A denoising diffusion probabilistic model (DDPM) tailored for conditional generation of protein distograms

denoising-diffusion-pytorch

Implementation of Denoising Diffusion Probabilistic Model in Pytorch

Enhanced_Sampling_Methods_Tutorials

Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..

freeenergy

insertion-deletion-ddpm

Implementation of Insertion-deletion Denoising Diffusion Probabilistic Models

Melodia_py

Protein Structure Analysis

VMD_zalign

A VMD script to align a membrane protein using RMSD alignment along Z axis only

qiyifei1/VMD_zalign

A VMD script to align a membrane protein using RMSD alignment along Z axis only

qiyifei1/alphafold

Open source code for AlphaFold.

qiyifei1/cog_stanford_alpaca

Code and documentation to train Stanford's Alpaca models, and generate the data.

qiyifei1/ddpm-ipa-protein-generation

Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequence Generation with Equivariant Denoising Diffusion Probabilistic Models"

qiyifei1/ddpm-proteins

A denoising diffusion probabilistic model (DDPM) tailored for conditional generation of protein distograms

qiyifei1/denoising-diffusion-pytorch

Implementation of Denoising Diffusion Probabilistic Model in Pytorch

qiyifei1/Enhanced_Sampling_Methods_Tutorials

Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..

qiyifei1/freeenergy

qiyifei1/insertion-deletion-ddpm

Implementation of Insertion-deletion Denoising Diffusion Probabilistic Models

qiyifei1/Melodia_py

Protein Structure Analysis

qiyifei1/Pymol-script-repo

Collected scripts for Pymol

qiyifei1/so-vits-svc-fork

so-vits-svc fork with realtime support, improved interface and more features.