qmuuu

qmuuu's Stars

• sfu-compbio/PhISCS

  Tumor Phylogeny Reconstruction via Integrative use of Single Cell and Bulk Sequencing Data

  Language:Python113

• cbg-ethz/COMPASS

  Language:C++1810

• BIMIB-DISCo/LACE

  LACE 2.0 is a new release of the LACE R Bioconductor package, which provides an interactive user interface to perform clonal evolution analyses for single-cell sequencing data, including longitudinal experiments. The tool also allows to annotate and retrieve the relevant variants based on user-defined criteria.

  Language:R154

• parklab/HiScanner

  Language:C4

• compbiofan/SimSCSnTree

  Language:Python6

• VanLoo-lab/ascat

  ASCAT R package

  Language:HTML16386

• aicb-ZhangLabs/Impeller

  Language:Jupyter Notebook61

• yueliu1999/Dink-Net

  [ICML 2023] An official source code for paper "Dink-Net: Neural Clustering on Large Graphs".

  Language:Python27434

• GraphSAINT/GraphSAINT

  [ICLR 2020; IPDPS 2019] Fast and accurate minibatch training for deep GNNs and large graphs (GraphSAINT: Graph Sampling Based Inductive Learning Method).

  Language:Python46888

• williamleif/GraphSAGE

  Representation learning on large graphs using stochastic graph convolutions.

  Language:Python3.4k841

• arq5x/lumpy-sv

  lumpy: a general probabilistic framework for structural variant discovery

  Language:C314118

• abyzovlab/CNVpytor

  a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads

  Language:Python18227

• raphael-group/chisel

  CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links

  Language:Python3711

• xiaoyeye/CCST

  Cell clustering for spatial transcriptomics data with graph neural network

  Language:Python5611

• Marigoldwu/A-Unified-Framework-for-Deep-Attribute-Graph-Clustering

  This project is a scalable unified framework for deep graph clustering.

  Language:Python8911

• yueliu1999/Awesome-Deep-Graph-Clustering

  Awesome Deep Graph Clustering is a collection of SOTA, novel deep graph clustering methods (papers, codes, and datasets).

  Language:Python809141

• haotianteng/FICT

  FISH Iterative Cell Typing

  Language:Python103

• automoss/automoss

  Automate the process of detecting similarities between code for a collection of computer science assignments.

  Language:JavaScript10919

• mckaywrigley/chatbot-ui

  Come join the best place on the internet to learn AI skills. Use code "chatbotui" for an extra 20% off.

  Language:TypeScript28.4k7.9k

• samsonweiner/CNAsim

  Language:Python51

• qasimyu/scssim

  a bioinformatics tool for simulating single-cell genome sequencing data

  Language:C++103

• flahertylab/scsim

  An application for jointly simulating correlated single-cell and bulk next-generation sequencing data

  Language:Python34

• mskcc/vcf2maf

  Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

  Language:Perl371216

• lh3/wgsim

  Reads simulator

  Language:C26191

• zhyu-lab/rccae

  A convolutional autoencoder based method for detecting tumor clones and copy number alterations from single-cell DNA sequencing data

  Language:C++6

• youngyangyang04/leetcode-master

  《代码随想录》LeetCode 刷题攻略：200道经典题目刷题顺序，共60w字的详细图解，视频难点剖析，50余张思维导图，支持C++，Java，Python，Go，JavaScript等多语言版本，从此算法学习不再迷茫！🔥🔥 来看看，你会发现相见恨晚！🚀

  Language:Shell50.9k11.4k

• abdur75648/Deep-Learning-Specialization-Coursera

  This repo contains the updated version of all the assignments/labs (done by me) of Deep Learning Specialization on Coursera by Andrew Ng. It includes building various deep learning models from scratch and implementing them for object detection, facial recognition, autonomous driving, neural machine translation, trigger word detection, etc.

  Language:Jupyter Notebook407346

• cbg-ethz/BnpC

  Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates

  Language:Python184

• yhoogstrate/bam-lorenz-coverage

  Generate Lorenz plots and Coverage plots directly from BAM files

  Language:Python9

• shahcompbio/single_cell_pipeline

  Single Cell Analysis Automated Workflow

  Language:Python2719