r-lib/pillar

tibble `type` cells don't align `title` correctly.

Yunuuuu opened this issue · 7 comments

Yunuuuu commented

tibble column type cells don't align title correctly. Maybe a left align is better.
image

Here is my sessionInfo:

> sessionInfo()
R version 4.1.1 (2021-08-10)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19042)

Matrix products: default

locale:
[1] LC_COLLATE=Chinese (Simplified)_China.936
[2] LC_CTYPE=Chinese (Simplified)_China.936
[3] LC_MONETARY=Chinese (Simplified)_China.936
[4] LC_NUMERIC=C
[5] LC_TIME=Chinese (Simplified)_China.936

attached base packages:
[1] stats     graphics  grDevices utils     datasets    
[6] methods   base

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.7           here_1.0.1
 [3] fansi_0.5.0          crayon_1.4.2
 [5] RevoUtilsMath_11.0.0 utf8_1.2.2
 [7] rprojroot_2.0.2      cellranger_1.1.0
 [9] lifecycle_1.0.1      jsonlite_1.7.2
[11] magrittr_2.0.1       pillar_1.6.4
[13] cli_3.1.0            rlang_0.4.12
[15] readxl_1.3.1         vctrs_0.3.8
[17] ellipsis_0.3.2       tools_4.1.1
[19] compiler_4.1.1       pkgconfig_2.0.3
[21] tibble_3.1.6
krlmlr commented

Thanks. Could you please provide a reproducible example? Please see https://reprex.tidyverse.org/ for guidance.

Yunuuuu commented

Sorry. I'll add a little data to reproduce it.

examp_data <- readr::read_tsv(
    I("SampleID\tgroup19\tgroup191\ts__Parabacteroides_merdae\ts__unclassified_g__Alistipes\ts__Prevotella_sp._CAG:5226\ts__Alistipes_shahii\ts__Alistipes_sp._CAG:435\ts__Bacteroides_stercorirosoris\ts__Eubacterium_sp._CAG:841\ts__Alistipes_finegoldii\ts__Firmicutes_bacterium_CAG:341\ts__Clostridium_sp._CAG:492\ts__Faecalibacterium_prausnitzii\ts__unclassified_g__Faecalibacterium\ts__uncultured_Clostridium_sp.\ts__unclassified_g__Butyricicoccus\ts__Faecalibacterium_sp._AF10-46\ts__Sutterella_sp._AM11-39\r\nHC_15\tHC\t\t0.0036195574451\t0.000253337069757\t3.44424923774e-05\t0.00020676097156\t0\t0.000102727475301\t2.40933707605e-06\t0.000134640087278\t1.77489300644e-05\t7.11111075236e-07\t0.0403923916627\t0.00886017704569\t0.0033076240884\t0.000696970669206\t0.000616490323363\t9.84850981571e-06\r\nHC_18\tHC\t\t0.00373676677765\t0.00437086834404\t2.66726811975e-05\t0.00131019117256\t6.5784483081e-07\t5.82076942855e-05\t1.05781324384e-05\t0.00132022148637\t3.54595228636e-06\t1.83121878518e-06\t0.0427112051422\t0.027574372777\t0.00313472936022\t0.00066206894772\t0.000455211549015\t1.0584412812e-05")
)

examp_data

here is the output:

image

It seems RStudio can give a pretty appearance. I'm using vscode with the raw r console (instead of radian).

the output of RStudio:
image

we can use the raw r terminal to reproduce this:

  1. run R.exe in a terminal (the R.exe path in windows or linux R command) (I don't know whether linux OS can give the issue)
  2. run following code:
examp_data <- readr::read_tsv(
    I("SampleID\tgroup19\tgroup191\ts__Parabacteroides_merdae\ts__unclassified_g__Alistipes\ts__Prevotella_sp._CAG:5226\ts__Alistipes_shahii\ts__Alistipes_sp._CAG:435\ts__Bacteroides_stercorirosoris\ts__Eubacterium_sp._CAG:841\ts__Alistipes_finegoldii\ts__Firmicutes_bacterium_CAG:341\ts__Clostridium_sp._CAG:492\ts__Faecalibacterium_prausnitzii\ts__unclassified_g__Faecalibacterium\ts__uncultured_Clostridium_sp.\ts__unclassified_g__Butyricicoccus\ts__Faecalibacterium_sp._AF10-46\ts__Sutterella_sp._AM11-39\r\nHC_15\tHC\t\t0.0036195574451\t0.000253337069757\t3.44424923774e-05\t0.00020676097156\t0\t0.000102727475301\t2.40933707605e-06\t0.000134640087278\t1.77489300644e-05\t7.11111075236e-07\t0.0403923916627\t0.00886017704569\t0.0033076240884\t0.000696970669206\t0.000616490323363\t9.84850981571e-06\r\nHC_18\tHC\t\t0.00373676677765\t0.00437086834404\t2.66726811975e-05\t0.00131019117256\t6.5784483081e-07\t5.82076942855e-05\t1.05781324384e-05\t0.00132022148637\t3.54595228636e-06\t1.83121878518e-06\t0.0427112051422\t0.027574372777\t0.00313472936022\t0.00066206894772\t0.000455211549015\t1.0584412812e-05")
)

examp_data
krlmlr commented

Thanks. It looks good in RStudio, in a reprex (see below), and in a plain terminal. Can you perhaps try a different font? I'm not sure what we can do here to fix it.

examp_data <- readr::read_tsv(
  I("SampleID\tgroup19\tgroup191\ts__Parabacteroides_merdae\ts__unclassified_g__Alistipes\ts__Prevotella_sp._CAG:5226\ts__Alistipes_shahii\ts__Alistipes_sp._CAG:435\ts__Bacteroides_stercorirosoris\ts__Eubacterium_sp._CAG:841\ts__Alistipes_finegoldii\ts__Firmicutes_bacterium_CAG:341\ts__Clostridium_sp._CAG:492\ts__Faecalibacterium_prausnitzii\ts__unclassified_g__Faecalibacterium\ts__uncultured_Clostridium_sp.\ts__unclassified_g__Butyricicoccus\ts__Faecalibacterium_sp._AF10-46\ts__Sutterella_sp._AM11-39\r\nHC_15\tHC\t\t0.0036195574451\t0.000253337069757\t3.44424923774e-05\t0.00020676097156\t0\t0.000102727475301\t2.40933707605e-06\t0.000134640087278\t1.77489300644e-05\t7.11111075236e-07\t0.0403923916627\t0.00886017704569\t0.0033076240884\t0.000696970669206\t0.000616490323363\t9.84850981571e-06\r\nHC_18\tHC\t\t0.00373676677765\t0.00437086834404\t2.66726811975e-05\t0.00131019117256\t6.5784483081e-07\t5.82076942855e-05\t1.05781324384e-05\t0.00132022148637\t3.54595228636e-06\t1.83121878518e-06\t0.0427112051422\t0.027574372777\t0.00313472936022\t0.00066206894772\t0.000455211549015\t1.0584412812e-05")
)
#> Rows: 2 Columns: 19
#> ── Column specification ────────────────────────────────────────────────────────
#> Delimiter: "\t"
#> chr  (2): SampleID, group19
#> dbl (16): s__Parabacteroides_merdae, s__unclassified_g__Alistipes, s__Prevot...
#> lgl  (1): group191
#> 
#> ℹ Use `spec()` to retrieve the full column specification for this data.
#> ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.

examp_data
#> # A tibble: 2 × 19
#>   SampleID group19 group191 s__Parabacteroid… s__unclassified_… `s__Prevotella…`
#>   <chr>    <chr>   <lgl>                <dbl>             <dbl>            <dbl>
#> 1 HC_15    HC      NA                 0.00362          0.000253        0.0000344
#> 2 HC_18    HC      NA                 0.00374          0.00437         0.0000267
#> # … with 13 more variables: s__Alistipes_shahii <dbl>,
#> #   `s__Alistipes_sp._CAG:435` <dbl>, s__Bacteroides_stercorirosoris <dbl>,
#> #   `s__Eubacterium_sp._CAG:841` <dbl>, s__Alistipes_finegoldii <dbl>,
#> #   `s__Firmicutes_bacterium_CAG:341` <dbl>,
#> #   `s__Clostridium_sp._CAG:492` <dbl>, s__Faecalibacterium_prausnitzii <dbl>,
#> #   s__unclassified_g__Faecalibacterium <dbl>,
#> #   s__uncultured_Clostridium_sp. <dbl>, …

Created on 2021-12-29 by the reprex package (v2.0.1)

Yunuuuu commented

Thanks for your prompt reply, I have tried Lucida Console font which is used in my RStudio, but it remains here.
image

Yunuuuu commented

It seems this just occurs in vscode-the integrated terminal.

Yunuuuu commented

Thanks for your help, this may be specific to vscode.

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