racalzadilla
Evolution + genetics + systems biology + idepi + theoretical biology. I'm in the business of counting people, molecules, and the shit that happens to them.
Puerto Rico Department of HealthPuerto Rico
racalzadilla's Stars
dbt-labs/dbt-core
dbt enables data analysts and engineers to transform their data using the same practices that software engineers use to build applications.
dvlab-research/MGM
Official repo for "Mini-Gemini: Mining the Potential of Multi-modality Vision Language Models"
materialsproject/pymatgen
Python Materials Genomics (pymatgen) is a robust materials analysis code that defines classes for structures and molecules with support for many electronic structure codes. It powers the Materials Project.
dynamicslab/pysindy
A package for the sparse identification of nonlinear dynamical systems from data
py-why/causal-learn
Causal Discovery in Python. It also includes (conditional) independence tests and score functions.
BioPandas/biopandas
Working with molecular structures in pandas DataFrames
Ecogenomics/GTDBTk
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
RosettaCommons/PyRosetta.notebooks
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
williamgilpin/pypdb
A Python API for the RCSB Protein Data Bank (PDB)
tropycal/tropycal
thomas-haslwanter/scikit-kinematics
Python functions for working with 3D kinematics.
jhrmnn/pyberny
Molecular structure optimizer
rcsb/py-rcsbsearchapi
Python interface for the RCSB PDB search API.
Global-Biofoundries-Alliance/SynBioPython
General low-level API
chanzuckerberg/czid-workflows
Portable WDL workflows for CZ ID production pipelines
maxscheurer/cppe
C++ and Python library for Polarizable Embedding
sbliven/rcsbsearch
Python interface for the RCSB search API.
rpep/fmmgen
Automatic code generation of Fast Multipole and Barnes-Hut operators
padpadpadpad/bartlett_et_al_2022_human_pathogens
Edinburgh-Genome-Foundry/Sequeduct
Sequencing analysis pipeline
sh-maxim/BetaTurn18
Reads a protein structure (PDB, mmCIF), locates beta turns and assigns their types using our 2018 library with 18 beta turn types. Also includes our 2018 beta turn library for use in third-party software.
ankitgupta83/DeepCME
A deep learning framework for solving the Chemical Master Equation
laphysique/Protein_RPA
apataskar/substitutants_manuscript
Code for manuscript datasets
mdsufz/StandEnA
JacobsWagnerLab/Oufti
An integrated software package for high-accuracy, high-throughput quantitative microscopy analysis
openplant/openplant_automation_protocols
ankitgupta83/maxRPA
Python code to scan maxRPA controller designs for a given controlled network
perfettp/BET-Tephra
A Python software package to compute and visualize long- and short- term eruption forecasting and probabilistic tephra hazard assessment of Campi Flegrei caldera.
yanjing32/Osmotic-Pressure-Project