/dbgap-reporter

Jupyter Notebooks to analyze the number of data access requests for dbGaP datasets and publication including RADx datasets.

Primary LanguageJupyter NotebookBSD 3-Clause "New" or "Revised" LicenseBSD-3-Clause

dbGaP Reporter

dbGaP Reporter analyzes data access requests for studies in the database of Genotypes and Phenotypes dbGaP. In addition, it queries Europe PMC for publications and preprints that cite or mention dbGaP accession numbers.

The number and type of requests for datasets is a measure of impact of data sharing.

Click the button below to launch dbGaP Reporter in your web browser using Google Colab (Google account sign-in is required).

dbGaP Reporter

RADx Reporter

RADx Reporter is a customized version of the dbGaP Reporter for COVID Rapid Acceleration of Diagnostics RADx Initiative projects:

RADx Reporter

Citation

Peter W. Rose, dbGaP Reporter: Analysis of dataset access requests for studies in the database of Genotypes and Phenotypes dbGaP. Available online: https://github.com/radxrad/dbgap-reporter (2023).

Funding

Development of this application was supported by the OFFICE OF THE DIRECTOR, NATIONAL INSTITUTES OF HEALTH:

RADx-Rad Discoveries & Data: Consortium Coordination Center Program Organization (7U24LM013755)