rafelafrance
If you stare into the data long enough, the data stares back.
Florida Museum of Natural HistoryGainesville Florida
Pinned Repositories
digi_leap_old
Extract information from images of herbarium specimens
FloraTraiter
Parsers (rule-based) for information extraction of traits from plant treatments
herbarium_phenology
Extract phenological data from digitized herbarium specimens
label_finder
Use a neural network to find labels on images of herbarium sheets
nitfix
Phylogenomic discovery and engineering of nitrogen fixation into the bioenergy woody crop poplar
ocr_ensemble
OCR herbarium labels with an ensemble of image processing and OCR engines
pdf_parsers
Utilities for parsing PDFs for information extraction
phenobase
Classifiers for the Phenobase project
phylogenomic_dataset_construction
traiter
Extract information from natural history annotations
rafelafrance's Repositories
rafelafrance/traiter
Extract information from natural history annotations
rafelafrance/digi_leap_old
Extract information from images of herbarium specimens
rafelafrance/FloraTraiter
Parsers (rule-based) for information extraction of traits from plant treatments
rafelafrance/herbarium_phenology
Extract phenological data from digitized herbarium specimens
rafelafrance/label_finder
Use a neural network to find labels on images of herbarium sheets
rafelafrance/ocr_ensemble
OCR herbarium labels with an ensemble of image processing and OCR engines
rafelafrance/pdf_parsers
Utilities for parsing PDFs for information extraction
rafelafrance/LabelTraiter
Extract traits from OCRed text of herbarium labels
rafelafrance/phenobase
Classifiers for the Phenobase project
rafelafrance/digi-leap
Extract information from labels on herbarium sheets
rafelafrance/reconcile_traits
Reconcile traits from LabelTraiter and ChatGPT4
rafelafrance/segment_seeds
Instance segmentation of seeds on images
rafelafrance/spell-well
A simple delete only spell checker
rafelafrance/common_utils
Utilities used in several repositories
rafelafrance/digi_leap_server
rafelafrance/dot_configs
Transfer my configs
rafelafrance/ectoparasites
Utilites and database supporting ectoparasite research
rafelafrance/label_reconciliations
Code for reconciling multiple transcriptions for a label
rafelafrance/lidar
A Python package for delineating nested surface depressions from digital elevation data.
rafelafrance/line-align
Multiple sequence alignment on lines of text
rafelafrance/mosquito
Support for research on mosquitos
rafelafrance/PowerRANGES
Rule-based trait parsers supporting the RANGES project
rafelafrance/qmk_firmware
Open-source keyboard firmware for Atmel AVR and Arm USB families
rafelafrance/reconcile
A rust version of the label reconciler
rafelafrance/traiter_efloras
Extract information in plant "treatments" from eFloras
rafelafrance/traiter_llm
Get traits from a large language model
rafelafrance/traiter_mimosa
Extract traits about mimosas from authoritative literature
rafelafrance/traiter_odonata
Extract trait information from field guides of dragonflies
rafelafrance/traiter_plants
Holds patterns common to all Traiter projects for plants
rafelafrance/traiter_vertnet