rahulvrane
algorithm & platform development for bioinformatics and AI
Commonwealth Scientific and Industrial Research Organisation, AustraliaMelbourne
Pinned Repositories
claude-engineer
Claude Engineer is an interactive command-line interface (CLI) that leverages the power of Anthropic's Claude-3.5-Sonnet model to assist with software development tasks. This tool combines the capabilities of a large language model with practical file system operations and web search functionality.
CrewMaker
dnds
Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.
exonerate
A generic tool for sequence alignment
ghostcoder
Solving the problems of merging incomplete code written by an LLM and splitting up code for embedding and indexing in a vector store.
HiFiAdapterFilt
Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
idba
orthonome
Orthonome - orthologue prediction pipelineg
playtime2
calculator
sequenceserver
Intuitive local web frontend for the BLAST bioinformatics tool
rahulvrane's Repositories
rahulvrane/orthonome
Orthonome - orthologue prediction pipelineg
rahulvrane/CrewMaker
rahulvrane/dnds
Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.
rahulvrane/dotai
rahulvrane/exonerate
A generic tool for sequence alignment
rahulvrane/ghostcoder
Solving the problems of merging incomplete code written by an LLM and splitting up code for embedding and indexing in a vector store.
rahulvrane/HiFiAdapterFilt
Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
rahulvrane/idba
rahulvrane/mckays-app-template
This is a full-stack app template for courses on Takeoff.
rahulvrane/playtime2
calculator
rahulvrane/sequenceserver
Intuitive local web frontend for the BLAST bioinformatics tool
rahulvrane/st
simple statistics from the command line
rahulvrane/swipe
Smith-Waterman database searches with inter-sequence SIMD parallelisation