The CoNetinR package provides an R implementation of CoNet. Note that this implementation has less functions than the Cytoscape implementation; for example, p-value merging and ensemble edge calculation is not available. For more information on the original implementation, go here.
To install the development version in R, use
library(devtools)
install_github("ramellose/CoNetinR")
library(CoNetinR) For a tour of CoNetinR, see the overview vignette.
Kindly cite this work as follows: Faust, K., & Raes, J. (2016). CoNet app: inference of biological association networks using Cytoscape. F1000Research, 5.