Systems Biology of Gene Regulatory Elements (N. Rajewsky lab)

Berlin, Germany

Pinned Repositories

distmap
DistMap
Language:R13 11 39
dropbead
Language:HTML6 5 138
find_circ2
Find circRNAs in RNA-seq data.
Language:Python14 5 26
FLAMAnalysis
Data Analysis For FLAM-Seq Third Generation RNA Sequencing
Language:Python7 7 23
mirdeep2
Discovering known and novel miRNAs from small RNA sequencing data
Language:Perl154 16 12350
novosparc
Language:Jupyter Notebook127 11 4642
openst
Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab
Language:HTML105 8 3619
planarian_lineages
Language:Jupyter Notebook26 5 57
spacemake
Language:Python41 6 6912
stimwrap
Language:Jupyter Notebook7 3 03

Systems Biology of Gene Regulatory Elements (N. Rajewsky lab)'s Repositories

rajewsky-lab/mirdeep2
Discovering known and novel miRNAs from small RNA sequencing data
Language:Perl154 16 12350
rajewsky-lab/novosparc
Language:Jupyter Notebook127 11 4642
rajewsky-lab/openst
Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab
Language:HTML105 8 3619
rajewsky-lab/spacemake
Language:Python41 6 6912
rajewsky-lab/planarian_lineages
Language:Jupyter Notebook26 5 57
rajewsky-lab/find_circ2
Find circRNAs in RNA-seq data.
Language:Python14 5 26
rajewsky-lab/distmap
DistMap
Language:R13 11 39
rajewsky-lab/FLAMAnalysis
Data Analysis For FLAM-Seq Third Generation RNA Sequencing
Language:Python7 7 23
rajewsky-lab/stimwrap
Language:Jupyter Notebook7 3 03
rajewsky-lab/dropbead
Language:HTML6 5 138
rajewsky-lab/Eskrate
Language:R3 8 21
rajewsky-lab/find_circ
Find circRNAs in RNA-seq data.
Language:Python3 5 01
rajewsky-lab/optocoder
Language:Python3 7 10
rajewsky-lab/bioanalyzer-profile
Analyze raw data from bioanalyzer
Language:R2 6 01
rajewsky-lab/clip_analysis
Scripts to analyze (PAR-)CLIP data.
Language:Python2 4 0
rajewsky-lab/byo
python library for efficient low-level stuff to access all kinds of data and cool high level things like transcripts, splicing, etc.
Language:Python1 5 0
rajewsky-lab/octopus_microRNAs
Language:Python1 6 10
rajewsky-lab/optocoder_scripts
Language:Python1 6 0
rajewsky-lab/PyMAF
Easy handling of MAF files and many genomes
Language:Python1 4 11
rajewsky-lab/SLAM-Drop-seq
Language:Python1 8 01
rajewsky-lab/.github
0 7 01
rajewsky-lab/helpers
'useful' little helper scripts for the day-to-day life in the N. Rajewsky dry lab
Language:Perl0 8 00
rajewsky-lab/HSV1_cerebral_organoids
Code related to the manuscript 'Modelling viral encephalitis caused by herpes simplex virus 1 infection in cerebral organoids'
0 6 00
rajewsky-lab/Huntington_midbrain_organoids
Code related to single cell transcriptomic analyses in the manuscript 'Mutant Huntingtin impairs neurodevelopment in human brain organoids through CHCHD2-mediated neurometabolic failure'
00
rajewsky-lab/SPACEGERM
SPACEGERM shiny app (archived, see GitLab for active fork)
Language:R0 3 00
rajewsky-lab/3D_lung
Code avaliability for the publication 'Combining spatial transcriptomics and ECM imaging in 3D for mapping cellular interactions the tumor microenvironment'
Language:Python
rajewsky-lab/novosparc_workshop
Language:Jupyter Notebook7 02
rajewsky-lab/polyA
Language:Python4 321
rajewsky-lab/rajewsky-lab.github.io
Lab website
Language:HTML4 0
rajewsky-lab/spacemake-test-data
Collection of optional sequencing read data for spacemake testing.
9 0