Pinned Repositories
archaic-chrX-sexbias
Code and data to reproduce main figures and simulations of Chevy, Huerta-Sanchez, and Ramachandran, 202X
ESNN
Code and simulations using an Ensemble of Single-Effect Neural Networks (ESNN)
genee
An Association Test for Aggregated Sets of SNP-Level Summary Statistics
HEBAE
Code and Analyses using the Hierarchical Empirical Bayes Autoencoder (HEBAE)
MixedAncestryGenomics
Course Materials for Biol 2440, Spring 2018
multiancestry_enrichment
Example code and scripts for Smith et al. 2022
PEGASUS
Scripts and references files for PEGASUS software for calculating gene-level p-values from GWA p-values
PEGASUS-WINGS
pong
Fast analysis and visualization of latent clusters in population genetic data
SWIFr
Sweep Inference Framework (controlling for correlation)
Ramachandran Lab's Repositories
ramachandran-lab/pong
Fast analysis and visualization of latent clusters in population genetic data
ramachandran-lab/SWIFr
Sweep Inference Framework (controlling for correlation)
ramachandran-lab/genee
An Association Test for Aggregated Sets of SNP-Level Summary Statistics
ramachandran-lab/ESNN
Code and simulations using an Ensemble of Single-Effect Neural Networks (ESNN)
ramachandran-lab/PEGASUS
Scripts and references files for PEGASUS software for calculating gene-level p-values from GWA p-values
ramachandran-lab/PEGASUS-WINGS
ramachandran-lab/HEBAE
Code and Analyses using the Hierarchical Empirical Bayes Autoencoder (HEBAE)
ramachandran-lab/MixedAncestryGenomics
Course Materials for Biol 2440, Spring 2018
ramachandran-lab/multiancestry_enrichment
Example code and scripts for Smith et al. 2022
ramachandran-lab/archaic-chrX-sexbias
Code and data to reproduce main figures and simulations of Chevy, Huerta-Sanchez, and Ramachandran, 202X
ramachandran-lab/soft-sweeps-dev-v2
ramachandran-lab/UPD_Detector
code and classifier parameters for ROH-based UPD detection
ramachandran-lab/deceptive_deeppath
ramachandran-lab/public_workflow_test
ramachandran-lab/ARG_Symposium
Dates: January 8, 9, 10, 13, 14, 15
ramachandran-lab/ML-MAGES
ML-MAGES: Machine learning approaches for multivariate genetic association analyses with genes and effect size shrinkage
ramachandran-lab/PEGASUS_flies
Application of the PEGASUS gene-level association test to the Drosophila Genome Reference Panel
ramachandran-lab/resources
Best practices and scientific resources
ramachandran-lab/SRS_paper