Pinned Repositories
deepdrivemd
DeepDriveMD implemented with Colmena
distllm
Distributed Inference for Large Language Models.
genslm
GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics
mdlearn
Machine learning for molecular dynamics
molecular_dynamics_neural_operator
Collection of machine learning models for learning molecular dynamics operators.
parslfold
Fold proteins in parallel using Parsl.
pdfwf
PDF to Text extraction workflow.
SciFM24-Tutorial
Tutorial notebooks for SciFM24
SyntheticSequenceEvaluation
A pipeline to evaluate synthetic sequences.
TPC-Barcelona-LLM-Tutorial
Large Language Models (LLMs) for Science and Engineering Applications -- Tutorial given at TPC conference in Barcelona 2024
ramanathanlab's Repositories
ramanathanlab/genslm
GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics
ramanathanlab/mdlearn
Machine learning for molecular dynamics
ramanathanlab/SciFM24-Tutorial
Tutorial notebooks for SciFM24
ramanathanlab/deepdrivemd
DeepDriveMD implemented with Colmena
ramanathanlab/distllm
Distributed Inference for Large Language Models.
ramanathanlab/pdfwf
PDF to Text extraction workflow.
ramanathanlab/SyntheticSequenceEvaluation
A pipeline to evaluate synthetic sequences.
ramanathanlab/TPC-Barcelona-LLM-Tutorial
Large Language Models (LLMs) for Science and Engineering Applications -- Tutorial given at TPC conference in Barcelona 2024
ramanathanlab/parslfold
Fold proteins in parallel using Parsl.
ramanathanlab/biolab
Protein/DNA Language Model benchmarks
ramanathanlab/deepdrivewe
Implementation of WESTPA using Colmena
ramanathanlab/protein_structure_hackathon
Hackathon repo for 11/28-11/30
ramanathanlab/8_IDI_workcell
A repository for 8_ID_I work cell and module
ramanathanlab/Benchmarks
ECP-CANDLE Benchmarks
ramanathanlab/CryoEM-GB-workflow-analysis
Analysis of workflow runs for the CryoEM-MD-AI Gordon Bell Submission
ramanathanlab/cs2_cvae
CS2 porting of CVAE code
ramanathanlab/Megatron-DeepSpeed
Ongoing research training transformer language models at scale, including: BERT & GPT-2
ramanathanlab/PicoProbeDataFlow
Data pipeline infrastructure for ANL PicoProbe
ramanathanlab/SummerStudentTemplate
TODO: Update with a brief project description
ramanathanlab/AmpQA
ramanathanlab/funcx-openfold
FuncX OpenFold interface
ramanathanlab/gladier_genslms
ramanathanlab/metric_learning
metric learning on document embeddings
ramanathanlab/multi-rl-workflow
Workflows that concurrently train, use, and gather training data for multiple RL models
ramanathanlab/nougat
Implementation of Nougat Neural Optical Understanding for Academic Documents
ramanathanlab/picoprobe-portal
Collate data from Globus Search for easy discovery and transfer
ramanathanlab/polaris_utils
ramanathanlab/protein-structure-template
ramanathanlab/SimAgent
ramanathanlab/xformers
Hackable and optimized Transformers building blocks, supporting a composable construction.