RAMPART protocol folder for EBOV
Clone this repository:
git clone https://github.com/rambaut/rampart-ebov.git
Create conda environment and activate it:
Create run folder:
mkdir [run_name]
cd [run_name]
Where [run_name]
is whatever you are calling todays run (as specified in MinKNOW).
Run RAMPART:
rampart --protocol ../rampart-ebov --basecalledPath ~/MinKNOW/data/reads/[run_name]/pass
basecalledPath
should be set to whereever MinKNOW/guppy is going to write its basecalled files.