rambaut/rampart-ebov

RAMPART protocol folder for EBOV

rampart-ebov

RAMPART protocol folder for EBOV

Installing

Clone this repository:

git clone https://github.com/rambaut/rampart-ebov.git

Create conda environment and activate it:

Running

Create run folder:

mkdir [run_name]
cd [run_name]

Where [run_name] is whatever you are calling todays run (as specified in MinKNOW).

Run RAMPART:

rampart --protocol ../rampart-ebov --basecalledPath ~/MinKNOW/data/reads/[run_name]/pass

basecalledPath should be set to whereever MinKNOW/guppy is going to write its basecalled files.