Pinned Repositories
TaxonDelineationMarineFW
This repository includes the R script, BOLD data sets, and RData files used to compare cluster strength in COI-5P sequence data from BOLD (Barcode Of Life Data System) in marine vs. freshwater organisms
FOCUS
FOCUS: An Agile Profiler for Metagenomic Data
MultiVarPipe
seq-align-bwa
In this analysis, sequence data (100 bp reads from the freshwater burbot fish) attained from Illumina HiSeq 2500 are aligned to different reference genomes using bwa to compare alignment rates. The two reference genomes used are the highly fragmented burbot genome in the NCBI database (with a low N50) and a well-developed cod genome (closely related to burbot). The sequence reads from freshwater burbot fish are aligned to both the Gadus morhua complete genome and the new burbot genome to observe variation in alignment rates between individuals and references.
Spoon-Knife
This repo is for demonstration purposes only.
SS2021
Variant-calling
Comparison of GATK and Bcftools variant callers using 10 burbot samples previously aligned to the new burbot genome using BWA.
ramibaghdan's Repositories
ramibaghdan/TaxonDelineationMarineFW
This repository includes the R script, BOLD data sets, and RData files used to compare cluster strength in COI-5P sequence data from BOLD (Barcode Of Life Data System) in marine vs. freshwater organisms
ramibaghdan/MultiVarPipe
ramibaghdan/SS2021
ramibaghdan/FOCUS
FOCUS: An Agile Profiler for Metagenomic Data
ramibaghdan/Variant-calling
Comparison of GATK and Bcftools variant callers using 10 burbot samples previously aligned to the new burbot genome using BWA.
ramibaghdan/seq-align-bwa
In this analysis, sequence data (100 bp reads from the freshwater burbot fish) attained from Illumina HiSeq 2500 are aligned to different reference genomes using bwa to compare alignment rates. The two reference genomes used are the highly fragmented burbot genome in the NCBI database (with a low N50) and a well-developed cod genome (closely related to burbot). The sequence reads from freshwater burbot fish are aligned to both the Gadus morhua complete genome and the new burbot genome to observe variation in alignment rates between individuals and references.
ramibaghdan/Spoon-Knife
This repo is for demonstration purposes only.