Pinned Repositories
simulated-data
Simulate HIV drug resistance.
bwt
Tiny Burrows-Wheeler transform example.
HIVIntact
A proviral intactness pipeline.
NanoHIV
pandit
Tools for running the pandit library with qscore, for alignment benchmarking purposes.
tb-gene-downloader
A Python scraper to download a TB gene from the Tuberculist website from the command line.
ramics's Repositories
ramics/HIVIntact
A proviral intactness pipeline.
ramics/NanoHIV
ramics/tb-gene-downloader
A Python scraper to download a TB gene from the Tuberculist website from the command line.
ramics/bwt
Tiny Burrows-Wheeler transform example.
ramics/pandit
Tools for running the pandit library with qscore, for alignment benchmarking purposes.
ramics/benchmark
Some of the benchmarks I used during my PhD thesis. Not currently maintained.
ramics/finger-exercises
simple algorithms, just for fun
ramics/general
ramics/plotly.py
the browser-based graphing library for python
ramics/proviral-intactness
A proviral intactness pipeline for full length FASTA sequences