ramsainanduri

cll_genie

PGxModule

PGxModule is an advanced Nextflow DSL2 workflow, designed to seamlessly integrate into your genomics pipeline. It empowers you to generate sample-specific reports with clinical guidelines, leveraging state-of-the-art variant detection in Genomic Medicine Sweden sequencing panels.

bash-handbook

:book: For those who wanna learn Bash

biotools

A list of useful bioinformatics resources

GROWeb

GROWeb is a user-friendly and accessible Flask application that brings the power of GROMACS simulations to the web. It allows users to design and execute molecular dynamics simulations, analyze simulation data, and visualize complex biomolecular systems in real-time.

nf-core-pgxplorer

pipeline_documentation

This repo generates automatic documentation for pipelines or tools by using a pipeline.yaml file and producing both HTML and MD documents. The MD document can be uploaded to a readthedocs server for online documentation. It uses the mkdocs format, with the required "docs" folder and related files in the project root folder.

Reverse_Compliment

split_multi_fasta

Split multi fasta file into single fasta files

subset_multifasta

Subset Multi Fasta

ramsainanduri/split_multi_fasta

Split multi fasta file into single fasta files

ramsainanduri/bash-handbook

:book: For those who wanna learn Bash

ramsainanduri/biotools

A list of useful bioinformatics resources

ramsainanduri/GROWeb

GROWeb is a user-friendly and accessible Flask application that brings the power of GROMACS simulations to the web. It allows users to design and execute molecular dynamics simulations, analyze simulation data, and visualize complex biomolecular systems in real-time.

ramsainanduri/nf-core-pgxplorer

ramsainanduri/pipeline_documentation

This repo generates automatic documentation for pipelines or tools by using a pipeline.yaml file and producing both HTML and MD documents. The MD document can be uploaded to a readthedocs server for online documentation. It uses the mkdocs format, with the required "docs" folder and related files in the project root folder.

ramsainanduri/Reverse_Compliment

ramsainanduri/SomaticPanelPipeline

ramsainanduri/aldy

Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes

ramsainanduri/bioinformatics

:microscope: Path to a free self-taught education in Bioinformatics!

ramsainanduri/bioinformatics-ca.github.io

repository for student workshop pages

ramsainanduri/GC_Content

GC content Calculator

ramsainanduri/subset_multifasta

Subset Multi Fasta

ramsainanduri/basic_tetris

Basic tetris is written in python and developed as a fun project

ramsainanduri/bioconda-recipes

Conda recipes for the bioconda channel.

ramsainanduri/BioGPT

ramsainanduri/cactus

Official home of genome aligner based upon notion of Cactus graphs

ramsainanduri/esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

ramsainanduri/graphein

Protein Graph Library

ramsainanduri/mavis

Merging, Annotation, Validation, and Illustration of Structural variants

ramsainanduri/modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

ramsainanduri/MyResume

ramsainanduri/PGx_Module

Anlysis of pharmacogenomic targets from Genomic Medicine Swedens heamatology panel.

ramsainanduri/ramsainanduri

ramsainanduri/skierfe

ramsainanduri/strelka

Strelka2 germline and somatic small variant caller

ramsainanduri/test-datasets

Test data to be used for automated testing with the nf-core pipelines

ramsainanduri/yanagi

Transcript Segment Library Construction for RNA-Seq Quantification