ramsainanduri
A young bioinformatician with a DNA for automation and a passion for crafting pipelines using shell, python, R, R Markdown, Nextflow, and Snakemake.
@Clinical-Genomics-Lund, Lund Hospital, Region SkaneSweden
Pinned Repositories
cll_genie
PGxModule
PGxModule is an advanced Nextflow DSL2 workflow, designed to seamlessly integrate into your genomics pipeline. It empowers you to generate sample-specific reports with clinical guidelines, leveraging state-of-the-art variant detection in Genomic Medicine Sweden sequencing panels.
bash-handbook
:book: For those who wanna learn Bash
biotools
A list of useful bioinformatics resources
GROWeb
GROWeb is a user-friendly and accessible Flask application that brings the power of GROMACS simulations to the web. It allows users to design and execute molecular dynamics simulations, analyze simulation data, and visualize complex biomolecular systems in real-time.
nf-core-pgxplorer
pipeline_documentation
This repo generates automatic documentation for pipelines or tools by using a pipeline.yaml file and producing both HTML and MD documents. The MD document can be uploaded to a readthedocs server for online documentation. It uses the mkdocs format, with the required "docs" folder and related files in the project root folder.
Reverse_Compliment
split_multi_fasta
Split multi fasta file into single fasta files
subset_multifasta
Subset Multi Fasta
ramsainanduri's Repositories
ramsainanduri/split_multi_fasta
Split multi fasta file into single fasta files
ramsainanduri/bash-handbook
:book: For those who wanna learn Bash
ramsainanduri/biotools
A list of useful bioinformatics resources
ramsainanduri/GROWeb
GROWeb is a user-friendly and accessible Flask application that brings the power of GROMACS simulations to the web. It allows users to design and execute molecular dynamics simulations, analyze simulation data, and visualize complex biomolecular systems in real-time.
ramsainanduri/nf-core-pgxplorer
ramsainanduri/pipeline_documentation
This repo generates automatic documentation for pipelines or tools by using a pipeline.yaml file and producing both HTML and MD documents. The MD document can be uploaded to a readthedocs server for online documentation. It uses the mkdocs format, with the required "docs" folder and related files in the project root folder.
ramsainanduri/Reverse_Compliment
ramsainanduri/SomaticPanelPipeline
ramsainanduri/aldy
Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
ramsainanduri/bioinformatics
:microscope: Path to a free self-taught education in Bioinformatics!
ramsainanduri/bioinformatics-ca.github.io
repository for student workshop pages
ramsainanduri/GC_Content
GC content Calculator
ramsainanduri/subset_multifasta
Subset Multi Fasta
ramsainanduri/basic_tetris
Basic tetris is written in python and developed as a fun project
ramsainanduri/bioconda-recipes
Conda recipes for the bioconda channel.
ramsainanduri/BioGPT
ramsainanduri/cactus
Official home of genome aligner based upon notion of Cactus graphs
ramsainanduri/esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
ramsainanduri/graphein
Protein Graph Library
ramsainanduri/mavis
Merging, Annotation, Validation, and Illustration of Structural variants
ramsainanduri/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
ramsainanduri/MyResume
ramsainanduri/PGx_Module
Anlysis of pharmacogenomic targets from Genomic Medicine Swedens heamatology panel.
ramsainanduri/ramsainanduri
ramsainanduri/skierfe
ramsainanduri/strelka
Strelka2 germline and somatic small variant caller
ramsainanduri/test-datasets
Test data to be used for automated testing with the nf-core pipelines
ramsainanduri/yanagi
Transcript Segment Library Construction for RNA-Seq Quantification