Pinned Repositories
Genome-Wide-Phylogenies.github.io
This page contains a tutorial to calculate local phylogenetic trees based on whole-genome data
genomics_general
General tools for genomic analyses.
IBD_vs_Vicariance
R scripts used to test correlations between geographic and genetic distances.
Introgression-tests-from-gene-trees
Script for detecting signals of introgression in large set of gene trees from unlinked markers
Museoscript
Script to process illumina reads from museum specimens
optiRADCT
pipeline for optimizing the clustering threshold in ipyrad RADseq assemblies
Pogoniulus-phylogenomics-manuscript-data
test.github.io
TopoWindows
Topology weighting/gene trees manipulation utilities in R
MSMC-IM
A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC
rancilhac's Repositories
rancilhac/Introgression-tests-from-gene-trees
Script for detecting signals of introgression in large set of gene trees from unlinked markers
rancilhac/optiRADCT
pipeline for optimizing the clustering threshold in ipyrad RADseq assemblies
rancilhac/Genome-Wide-Phylogenies.github.io
This page contains a tutorial to calculate local phylogenetic trees based on whole-genome data
rancilhac/genomics_general
General tools for genomic analyses.
rancilhac/IBD_vs_Vicariance
R scripts used to test correlations between geographic and genetic distances.
rancilhac/Museoscript
Script to process illumina reads from museum specimens
rancilhac/Pogoniulus-phylogenomics-manuscript-data
rancilhac/test.github.io
rancilhac/TopoWindows
Topology weighting/gene trees manipulation utilities in R