/UC2-GIT

Respository for Open-Science modular microscope system.

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UC2 - Open and Modular Optical Toolbox


New: New module: Rectangular Aperture; Simpler and better modules: Mechanical Z-stage, Sample-stage for light sheet microscope, Magnetic Sample Holder and openSCAD Lens Holder

New: We have a complete Bill of materials with price estimates.

New: Our new Pre-print fresh from the press is available on Biorxiv

Open Source Love


Start here! Everything is open-source - simply join!

Steps to reproduce and use the toolbox:

Too many new things? Follow our tutorials From a Beginner to a Professional!

Already familiar? Click here if you are looking for...

TheBOX General toolbox Specific setup Workshops
Choose a version and build your own BOX. Explore the toolbox and its applications. Alternatives for many Microscopy methods... and more. Host or join a UC2 workshop.

... or keep on reading to learn more!


Making open-science great again!

UC2 is a general-purpose modular framework for making interactive (electro)-optical projects. Most optical systems such as microscopes follow a simple 4f or Fourier-optical principle, where lenses are aligned such that focal-planes of adjacent components overlap to limit the amount of aberrations as much as possible and to be able to predict the system-behavior easily using Fourier-transforms.

Following this idea, a microscope as shown in Fig 1 creates an angular magnification depending on the focal lenghts of the objective fobj and tube lens ftube:

M4f= ftube/fobj


Fig. 1: Fourier-Optical Setup; Koehler Illumination where the illumination plane is conjugate to the objective pupil plane (BFP)

Besides optical components, the UC2 building blocks can also host electronics such as Arduinos or ESP32s to create ''smart'' functions like LED array illumination, Z-stages, et cetera. Communication can be granted through the wired BUS or the wireless MQTT protocol.

UC2 is in active development. It is meant to be used not only by beginners, but also for professionals dealing with optical setups on a daily basis. Its magnetic click-and-go concept simplifies the process of aligning and adjusting the parts giving new tools acting as rapid-prototyping devices. It also comes with a series of open-source workshops (in the future) explaining the theory behind optics.

People are also encouraged to share their work. We are curious what the community is doing with our little blocks. All necessary details to modify the design of the blocks are given in the sub-folders of the specific folders. Share your ideas through our @openUC2-Twitter account.

A full cube + base-plate looks like that:


Fig. 2: Assembly of the cube + base-plate; A set of ferro-magnetic screws hold the lid and base-cube in place and connect to four 5mm Neodym ballmagnets sitting in the base-plate; Optical components find their place inside the cube.

UC2 can be used with cameras from the Raspberry Pi world, but creates even more beautiful images with your cellphone. Thus making cutting edge-research not only affordable, but also available. A more in-detail project description can be found in the UC2 White-Paper

UC2 as an "open-standard"

The idea is to use UC2 as an open-standard or bridge to external hardware components and devices such as cameras or lenses. An already existing or customized adapter/insert creates the link to the UC2 eco-system. A variety of ready-to-use adapters can be found in the folder CAD.


Fig. 3: The structure of any UC2 assembly follows the green lines; A basic cube can hold an insert thus adapting to different components (i.e. lenses, etc.); A number of assembled cube-modules can form a complex optical system here called application

A more in-detail description of the MDK (Modular Developer Kit) which explains how your idea can be adapted to the module system can be found in the MDK-folder.

If you have a new part, we are eager to see it. Please feel free to share it on available websites like Twitter, Thingiverse, Github or any other platform of choice!

Read more about the project in our papers:

Our new Pre-print is available on Biorxiv
The COSI conference paper is out on OSA

Where next?

Complete overview of setups, modules, parts to buy and parts to print

Find a complete shopping'n'printing list including estimated prices for all modules and setups in this BILL OF MATERIALS!

List of available Setups

Our goal is to make as many setups as possible available, so that people can play with it. Basically everything's possible, you just need to think in blocks! Please have a look in the APPLICATIONS folder for the up to date list of the setups.


Fig. 4: In-line holographic microscope

Repositories

Currently, UC2 consists of the following repositories:

Software

There is a GitHub repository dedicated for the UC2 software. It can be found here. It supports you with controller APPS for the Raspberry Pi and Android Cellphones.

Workshops

The documented workshops can be found in the folder WORKSHOP and give a step-by-step introduction into the system. We have done multiple workshops together with the HHMI Janelia Farm, UiO Oslo, Lichtwerkstatt Jena and Leibniz IPHT Jena e.V.
If you're interested we are happy to host one near you!

Get Involved

This project is open so that anyone can get involved. You don't even have to learn CAD designing or programming. Find ways you can contribute in CONTRIBUTING

Kits, License and Collaboration

This project is open-source and is released under the CERN open hardware license. Our aim is to make the kits commercially available. We encourage everyone who is using our Toolbox to share their results and ideas, so that the Toolbox keeps improving. It should serve as a easy-to-use and easy-to-access general purpose building block solution for the area of STEAM education. All the design files are generally for free, but we would like to hear from you how is it going.

You're free to fork the project and enhance it. If you have any suggestions to improve it or add any additional functions make a pull-request or file an issue.

Please find the type of licenses here

REMARK: All files have been designed using Autodesk Inventor 2019 (EDUCATION)

Showcase

This is the mess you can end up during Fourier-optics session using UC2 components. Pure-fun! :-)

Credits

If you find this project useful, please like this repository, follow us on Twitter and cite the webpage! :-)

B. Diederich, R. Lachmann, B. Marsikova, E. Bingöl, S. Carlstedt, X. Uwurukundo, H. Wang, R. Heintzmann, Lichtwerkstatt, IPHT Jena, HHMI Janelia Farm, UiO Oslo, NorMic and many more