raonyguimaraes

bioinfo_pipelines

bioinformatics_scripts

Some Python/R/* scripts for bioinformatics

BioTorch

Analysis of the 1000Genomes Project to generate personal health reports for each individual

Data-Mining---TP3

Trabalho Prático 3 de Mineração de Dados

mendelmd

An online tool for annotating, filtering and diagnosing patients (Exome and Genome) with Mendelian Disorders.

mendelmd_phd_thesis

This is the public repository of my PHD Thesis entitled: "Mendel,MD: Desenvolvimento e validação de uma ferramenta online para análise de exomas humanos e investigação de doenças Mendelianas"

ngs_metrics

Software Suite to calculate metrics in FASTQ/BAM/VCF files and generate visual reports using python scripts

pynnotator

This is a Genome Annotation Framework developed with the goal of annotating VCF files (Exomes or Genomes) from patients with Mendelian Disorders.

SeqPrep

Tool for stripping adaptors and/or merging paired reads with overlap into single reads.

vcfPytools

vcf file manipulation

raonyguimaraes/mendelmd

An online tool for annotating, filtering and diagnosing patients (Exome and Genome) with Mendelian Disorders.

raonyguimaraes/amazon-genomics-cli

raonyguimaraes/awesome-crypto-trading-bots

Awesome crypto trading bots

raonyguimaraes/bambi

Process Illumina instrument data into SAM/BAM/CRAM files.

raonyguimaraes/bioinformatics-workflows

minimal example implementations for bioinformatics workflow managers

raonyguimaraes/d4-format

The D4 Quantatative Data Format

raonyguimaraes/DRAGMAP

DRAGEN open-source mapper

raonyguimaraes/kinetick

Framework for creating and running trading strategies. Blatantly stolen copy of qtpylib to make it work for Indian markets.

raonyguimaraes/KOGOworkshop

raonyguimaraes/LoFTK

The Loss-of-Function ToolKit (LoFTK) allows efficient and automated prediction of LoF variants from both genotyped and sequenced genomes, identifying genes that are inactive in one or two copies, and providing summary statistics for downstream analyses.

raonyguimaraes/n8n

Free and open fair-code licensed node based Workflow Automation Tool. Easily automate tasks across different services.

raonyguimaraes/nf-gwas-pipeline

A Nextflow Genome-Wide Association Study (GWAS) Pipeline

raonyguimaraes/nft-peppers

Generative Art NFTs From Genomic Data

raonyguimaraes/notebooks

My notebooks

raonyguimaraes/Pancakeswap-Prediction-Smartbot

NEW⚡ PancakeSwap Prediction Bot using AI live recommendations. ~70% Win rate 🔮

raonyguimaraes/pure-bash-bible

📖 A collection of pure bash alternatives to external processes.

raonyguimaraes/SAIGE-1

Development for SAIGE and SAIGE-GENE(+)

raonyguimaraes/saige-pipelines

raonyguimaraes/seek

For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.

raonyguimaraes/shinyCyJS

cytoscape.js R binding library for shiny

raonyguimaraes/SKAT

Sequence kernel association test (SKAT)

raonyguimaraes/UKB_RAP

Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DNAnexus webinars, online trainings and workshops.

raonyguimaraes/YouPlot

A command line tool that draw plots on the terminal.

raonyguimaraes/yvrv

Scripts for create database YVr-DB version 1.0

raonyguimaraes/zipline-trader

Zipline Trader, a Pythonic Algorithmic Trading Library with broker integration

raonyguimaraes/ChatGPT-AutoExpert

🚀🧠💬 Supercharged Custom Instructions for ChatGPT (non-coding) and ChatGPT Advanced Data Analysis (coding).

raonyguimaraes/CNV-clinviewer

raonyguimaraes/msm

Improved statistical classifier for immune repertoires

raonyguimaraes/opentf

OpenTF lets you declaratively manage your cloud infrastructure.

raonyguimaraes/rdmaster-src