/hatchet

HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jointly across multiple tumor samples from the same patient, and that leverages the relationships between clones in these samples.

Primary LanguageRoffBSD 3-Clause "New" or "Revised" LicenseBSD-3-Clause

CI codecov

HATCHet

HATCHet is an algorithm to infer allele and clone-specific copy-number aberrations (CNAs), clone proportions, and whole-genome duplications (WGD) for several tumor clones jointly from multiple bulk-tumor samples of the same patient or from a single bulk-tumor sample.

Complete documentation for HATCHet is available at https://raphael-group.github.io/hatchet/