rargelaguet
Computational biologist at Altos Labs studying multi-omics at single-cell resolution. Previously Babraham Institute, EMBL-EBI and Cambridge Uni.
Altos Labs (https://altoslabs.com/)Cambridge, UK
Pinned Repositories
10x_gastrulation_DNMTs
Dnmt3a, Dnmt3b, Dnmt1 KO scRNA-seq mouse early organogenesis
10x_gastrulation_TetChimera
10x_gastrulation_TetChimera
mofa_training
MOFA training resources
mouse_organogenesis_10x_multiome_publication
Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
scNMT-seq
single-cell Nucleosome Methylation Transcription
scnmt_eb
single-cell multi-omics study of embryoid body differentiation
scnmt_gastrulation
scNMT-seq gastrulation
scnmt_gastrulation_TetChimera
scNMT-seq from Tet TKO chimeras
shiny_multiome_organogenesis
R Shiny app for the 10x Multiome mouse organogenesis project
thesis
University of Cambridge PhD thesis
rargelaguet's Repositories
rargelaguet/scnmt_gastrulation
scNMT-seq gastrulation
rargelaguet/mouse_organogenesis_10x_multiome_publication
Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
rargelaguet/thesis
University of Cambridge PhD thesis
rargelaguet/mofa_training
MOFA training resources
rargelaguet/scNMT-seq
single-cell Nucleosome Methylation Transcription
rargelaguet/10x_gastrulation_DNMTs
Dnmt3a, Dnmt3b, Dnmt1 KO scRNA-seq mouse early organogenesis
rargelaguet/scnmt_eb
single-cell multi-omics study of embryoid body differentiation
rargelaguet/betabinomial_simulations
rargelaguet/DUX4_8CLC_hESCs
DUX4_ hESCs_multiome
rargelaguet/EMBO-multi-omics-course
rargelaguet/pyro_tests
Pyro (probabilistic PyTorch) tests
rargelaguet/shiny_multiome_organogenesis
R Shiny app for the 10x Multiome mouse organogenesis project
rargelaguet/single_cell_training
Training material for single-cell analysis
rargelaguet/test_stan
Testing Stan MCMC and Variational Bayes capabilities
rargelaguet/10x_gastrulation_TetChimera
10x_gastrulation_TetChimera
rargelaguet/scnmt_gastrulation_TetChimera
scNMT-seq from Tet TKO chimeras
rargelaguet/autoconsum_catalunya
Anàlisi de dades sobre l'autoconsum energètic a Catalunya
rargelaguet/funcompbio.github.io
rargelaguet/gastrulation10x
rargelaguet/Guo2017_preimplantation
COOL-seq Guo2017
rargelaguet/MSC_UPF_multiomics
Slides and vignette for the Data Integration lecture at Universitat Pompeu Fabra (May 2020)
rargelaguet/MSC_UPF_singlecell
Single-cell data analysis: MSc Bioinformatics UPF
rargelaguet/rargelaguet.github.io
Personal webpage (Hugo Blox)
rargelaguet/scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
rargelaguet/shiny_dnmt
Shiny app for the DNMT and TET KO cellular atlas
rargelaguet/shiny_rna_embryogenesis
R Shiny app to visualise gene expression during embryogenesis
rargelaguet/try-manubot
A repository to practice contributing to a Manubot manuscript
rargelaguet/Wang2021_mouse_preimplantation
Analysis of Wang2021 mouse preimplantation scNOMeRe-seq data
rargelaguet/whitePaper
Manubot for white paper