Pinned Repositories
2024-04-23-rice-health-in-nepal-online
adv-r
Advanced R programming: a book
ann-benchmarks
Benchmarks of approximate nearest neighbor libraries in Python
anvio
An analysis and visualization platform for 'omics data
KEIO
KEIO: A python software to process illumina reads for keio-collection type project
PhONA
RiceInNepal
GuideMaker
GuideMaker: Software to design CRISPR-Cas guide RNA pools in non-model genomes
metagenomics
Tutorial for Metagenomics Analyses
ravinpoudel's Repositories
ravinpoudel/ann-benchmarks
Benchmarks of approximate nearest neighbor libraries in Python
ravinpoudel/anvio
An analysis and visualization platform for 'omics data
ravinpoudel/awesome-pipeline
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
ravinpoudel/aws-genomics-workflows
Genomics Workflows on AWS
ravinpoudel/Bioinformatics-Software
Bioinformatics software list
ravinpoudel/biotools
A list of useful bioinformatics resources
ravinpoudel/CheckM
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
ravinpoudel/CoDaSeq
Functions for compositional analysis of high throughput sequencing
ravinpoudel/compositions
Site that contains musings and code for compositional analysis of high throughput sequencing experiments
ravinpoudel/CONCOCT
Clustering cONtigs with COverage and ComposiTion
ravinpoudel/conf_tensorflow_training_day1
1-day Deep Learning with R workshop at RStudio::conf 2019
ravinpoudel/conf_tensorflow_training_day2
TensorFlow training at RStudio::conf(2019)
ravinpoudel/cruk-summer-school-2019
Summer School 2019 - Functional Genomics
ravinpoudel/deeplearning-biology
A list of deep learning implementations in biology
ravinpoudel/DeepLearning-in-Bioinformatics
For anyone who are eager to applying deep learning in bioinformatics!
ravinpoudel/educate-resource-for-machine-learning
This ebook from Jason Brownlee, and many others.
ravinpoudel/graphmap
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html
ravinpoudel/kaiju
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
ravinpoudel/machine-learning-programming-assignments-coursera-andrew-ng
Solutions to Andrew NG's machine learning course on Coursera
ravinpoudel/megan-ce
MEGAN Community Edition
ravinpoudel/MetaG_Pipeline
Edna Chiang's Metagenomic Analysis Pipeline
ravinpoudel/metagenomics-tutorials
Additional scripts from tutorials on tylerbarnum.com
ravinpoudel/metaWRAP
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
ravinpoudel/MultiGuideScan
a multi-processing tool for designing CRISPR guide RNA library
ravinpoudel/pachyderm
Reproducible Data Science at Scale!
ravinpoudel/quast
Genome assembly evaluation tool
ravinpoudel/snakemake-barcoding-assembly-pipeline
Snakemake Pipeline for processing COI sequencing data
ravinpoudel/spades
SPAdes Genome Assembler
ravinpoudel/Unicycler
hybrid assembly pipeline for bacterial genomes
ravinpoudel/vsearch
Versatile open-source tool for metagenomics