raw937
Assistant Professor of Bioinformatics and genomics at UNC Charlotte. Multiomics of complex microbiomes (Microbialites, Mammals, Soils)
RAW Molecular Systems LLC & UNC Charlotte Concord, NC
Pinned Repositories
atlas-original
From Pre-print. ATLAS (Automatic Tool for Local Assembly Structures) - a comprehensive infrastructure for assembly, annotation, and genomic binning of metagenomic and metatranscriptomic data
bacterialpopulationgenomics
Bacterial Population Genomics Special Topics Course PLP 512: Special Topics in Plant Pathology (1 unit), Washington State University
FABI_workshop
Metagenomics and metatranscriptomics workshop -Forestry and Agricultural Biotechnology Insititute (FABI), University of Pretoria, South Africa, 22-26 October 2018
FOAM
script to run FOAM
mercat
MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
oneliners
One liners and useful scripts for computational biology
pattern_classification
A collection of tutorials and examples for solving and understanding machine learning and pattern classification tasks
Proteomics
Strain_RW1
This is code and data associated with strain manuscript "The complete genome and physiological analysis of the microbialite-dwelling Agrococcus pavilionensis sp. nov; reveals genetic promiscuity and predicted adaptations to environmental stress" Frontiers
Strain_RW2
This is code and data associated with strain manuscript "The complete genome and physiological analysis of the eurythermal firmicute Exiguobacterium chiriqhucha strain RW2 isolated from a freshwater microbialite, widely adaptable to broad thermal, pH and salinity ranges" Frontiers
raw937's Repositories
raw937/FABI_workshop
Metagenomics and metatranscriptomics workshop -Forestry and Agricultural Biotechnology Insititute (FABI), University of Pretoria, South Africa, 22-26 October 2018
raw937/oneliners
One liners and useful scripts for computational biology
raw937/atlas-original
From Pre-print. ATLAS (Automatic Tool for Local Assembly Structures) - a comprehensive infrastructure for assembly, annotation, and genomic binning of metagenomic and metatranscriptomic data
raw937/bacterialpopulationgenomics
Bacterial Population Genomics Special Topics Course PLP 512: Special Topics in Plant Pathology (1 unit), Washington State University
raw937/FOAM
script to run FOAM
raw937/pattern_classification
A collection of tutorials and examples for solving and understanding machine learning and pattern classification tasks
raw937/Proteomics
raw937/Strain_RW2
This is code and data associated with strain manuscript "The complete genome and physiological analysis of the eurythermal firmicute Exiguobacterium chiriqhucha strain RW2 isolated from a freshwater microbialite, widely adaptable to broad thermal, pH and salinity ranges" Frontiers
raw937/atlas-beta
Beta version of ATLAS in the sean-dev branch.
raw937/deep-learning-book
Repository for "Introduction to Artificial Neural Networks and Deep Learning: A Practical Guide with Applications in Python"
raw937/mercat
MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
raw937/Metapathways
centos version
raw937/phytobacteriology
PLP 514 Phytobacteriology - Washington State University
raw937/progbio
Teaching materials for classes teaching programming to biologists
raw937/python-machine-learning-book
The "Python Machine Learning (1st edition)" book code repository and info resource
raw937/python-machine-learning-book-2nd-edition
The "Python Machine Learning (2nd edition)" book code repository and info resource
raw937/SharkBay_archaea
raw937/SharkBay_metagenomes
raw937/SharkBay_virome
microbialites stromatolites metagenomes metagenomics denovo-assembly
raw937/Software-carpentry-2015
raw937/Strain_RW1
This is code and data associated with strain manuscript "The complete genome and physiological analysis of the microbialite-dwelling Agrococcus pavilionensis sp. nov; reveals genetic promiscuity and predicted adaptations to environmental stress" Frontiers
raw937/anvio
An analysis and visualization platform for 'omics data
raw937/atlas_beta
raw937/chunker
Command line tool to split a file into chunks of user-specified size, respecting delimitted breaks.
raw937/Data-Science-Cheat-Sheets
List of Data Science Cheatsheets to rule the world
raw937/metagenomics-workshop
Metagenomics Workshop 2014-5-21 to 2014-5-23 at SciLifeLab, Stockholm
raw937/pleucotricha_mildew
raw937/raw937