razofz
IT engineer transitioning into a data engineer. Currently working as a bioinformatician at Lund University (Bryder lab).
Lund University, Biomedical CentreMalmö
Pinned Repositories
scarf
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
adventofcode2020
My solutions to this year's Advent of Code https://adventofcode.com/2020
aoc22
Advent of Code 2022
CB_FL
Accompanying code for: Single-cell multiomics of human fetal hematopoiesis defines a developmental specific population and a fetal signature
CB_lab_cookiecutter
Template to generate analysis project structure for bioinformaticians in the Charlotta Böijers lab at Lund University.
DB_AKC_citeseq
Accompanying code for analysis of manuscript in Nature Aging: Implications of stress-induced gene expression for hematopoietic stem cell aging studies
DB_QZ_multiome
Multiome (RNA+ATAC from same cell) data generated by Qinyu Zhang in David Bryder's lab. Paper here: https://doi.org/10.7554/eLife.91826.2
dotfiles
my dotfiles
scarf-1
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, ATAC-Seq and CITE data. Analyze atlas scale datasets with millions of cells on laptop.
SSOmaker
A Shiny webapp for creating a Seurat object without programming expertise. Load a count matrix directory, interactively filter on metadata, view results, download Seurat object and results of differential gene expression testing.
razofz's Repositories
razofz/adventofcode2020
My solutions to this year's Advent of Code https://adventofcode.com/2020
razofz/scarf-1
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, ATAC-Seq and CITE data. Analyze atlas scale datasets with millions of cells on laptop.
razofz/SSOmaker
A Shiny webapp for creating a Seurat object without programming expertise. Load a count matrix directory, interactively filter on metadata, view results, download Seurat object and results of differential gene expression testing.
razofz/aoc22
Advent of Code 2022
razofz/Apollo
Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
razofz/CB_FL
Accompanying code for: Single-cell multiomics of human fetal hematopoiesis defines a developmental specific population and a fetal signature
razofz/CB_lab_cookiecutter
Template to generate analysis project structure for bioinformaticians in the Charlotta Böijers lab at Lund University.
razofz/DB_AKC_citeseq
Accompanying code for analysis of manuscript in Nature Aging: Implications of stress-induced gene expression for hematopoietic stem cell aging studies
razofz/DB_QZ_multiome
Multiome (RNA+ATAC from same cell) data generated by Qinyu Zhang in David Bryder's lab. Paper here: https://doi.org/10.7554/eLife.91826.2
razofz/docker-stacks
Ready-to-run Docker images containing Jupyter applications
razofz/dotfiles
my dotfiles
razofz/eda095_lab3
razofz/EDAN20_mnx10jpa_muh11rol
razofz/hackaTUM18
razofz/Piaette
razofz/fullPage.js
fullPage plugin by Alvaro Trigo. Create full screen pages fast and simple
razofz/gohugo-theme-ananke
Ananke: A theme for Hugo Sites
razofz/hallo-hugo
Hallo is a single-page Hugo theme to introduce yourself.
razofz/helper-scripts
A collection of scripts that are useful to me
razofz/MyFirstApp
My first Android app. It's done as a part of an assignment of a course at LTH, namely [MAMN01]
razofz/nabo
Python library to perform memory efficient cross-sample cell mapping using single cell transciptomics (scRNA-Seq) data
razofz/Project2
XL
razofz/python-interrogate-check
GitHub Action for use with python package interrogate
razofz/razfall
an attempt at implementing the spyfall game
razofz/razofz.github.io
Github Pages (new version)
razofz/RegNMF
razofz/rosalind
A repo for rosalind.info problems
razofz/sec_of_a_spider
razofz/stefanometern
hack the crisis
razofz/TAI