Pinned Repositories
BAS-files
Contains atlas definition files for the Brain Addressing System
brainaddress
A brain address points to a location in a reference brain, publicly hosted by one of our registered brain atlas providers.
brainaddress-providers
cocomac-engine
The engine that powers the cocomac.g-node.org website (search wizard and interactive results)
cocomac-jsondb
Contains the raw data of cocomac in more or less human readable form
cyclevision
inschrijving CycleVision
cyclevision2022
FancyPipe
FancyPipe is a lightweight python package for running data processing pipelines. It takes care of parallel processing, html-based logging, parameter management, garbage collection and error handling.
HBP-morphology-viewer
Web-based 3d neuron morphology viewer
MultiAtlasRegistration
Multi Atlas Registration pipeline for estimating brain areas in MRI images on the basis of a set of manually segmented examples.
rbakker's Repositories
rbakker/HBP-morphology-viewer
Web-based 3d neuron morphology viewer
rbakker/MultiAtlasRegistration
Multi Atlas Registration pipeline for estimating brain areas in MRI images on the basis of a set of manually segmented examples.
rbakker/cocomac-jsondb
Contains the raw data of cocomac in more or less human readable form
rbakker/FancyPipe
FancyPipe is a lightweight python package for running data processing pipelines. It takes care of parallel processing, html-based logging, parameter management, garbage collection and error handling.
rbakker/brainaddress
A brain address points to a location in a reference brain, publicly hosted by one of our registered brain atlas providers.
rbakker/cyclevision
inschrijving CycleVision
rbakker/BAS-files
Contains atlas definition files for the Brain Addressing System
rbakker/brainaddress-providers
rbakker/cocomac-engine
The engine that powers the cocomac.g-node.org website (search wizard and interactive results)
rbakker/cyclevision2022
rbakker/dwi-for-neurosurgery
rbakker/fancylog
Fancy logging tool for python pipelines
rbakker/FancySite
Need a website with a consistent layout, but want to write your own php/html? FancySite is an extremely lightweight library that allows you to take
rbakker/fiind
Ferret interactive integrated neurodevelopment atlas. Check out the website https://neuroanatomy.github.io/fiind/
rbakker/git-tutorial
rbakker/gkpdfparser
rbakker/greedy-neuron-stitcher
rbakker/HBP-slice-aligner
rbakker/JSON.minify
Simple minifier for JSON to remove comments and whitespace
rbakker/OneCut
rbakker/possum-pipelines
rbakker/retreat
rbakker/sba-composer
Scalable Brain Atlas - Composer
rbakker/sba-dev
rbakker/tck-viewer
View header and fiber tracts from a mrtrix .tck file and view in 3d using plotly.js.
rbakker/thalamocortical
rbakker/where-in-the-brain
micro-standard to specify location in the brain
rbakker/x3dom
X3DOM. A framework for integrating and manipulating X3D scenes as HTML5/DOM elements.