rbleite

rbleite's Stars

• GTPB/ADER19F

  ADER19F - Analysis of Differential Expression with RNAseq

  Language:Ruby52

• igcbioinformatics/genoqual

  Language:Python12

• constantAmateur/SoupX

  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data

  Language:R25735

• satijalab/seurat

  R toolkit for single cell genomics

  Language:R2.3k913

• bioinformatics-centre/kaiju

  Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

  Language:C27166

• BioData-PT/Biome-Shiny

  A Shiny R app for microbiome visualisation

  Language:R82

• GenomiqueENS/eoulsan

  A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)

  Language:Java5210

• amar00k/D-cellerate

  Web application

  Language:R2

• brettc/partitionfinder

  PartitionFinder discovers optimal partitioning schemes for DNA sequences.

  Language:Python6144

• s-andrews/FastQC

  A quality control analysis tool for high throughput sequencing data

  Language:Java44486

• OpenGene/fastp

  An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

  Language:C++1.9k333

• mikolmogorov/Ragout

  Chromosome-level scaffolding using multiple references

  Language:Python15627

• labBioinfo/workflow

  Bioinformatics Lab Final Project for 3rd Year IPS Bioinformatic Students

  Language:HTML3

• labBioinfo/classes

  Repo to host the "Lab. bioinformática" classes

  1

• DerrickWood/kraken2

  The second version of the Kraken taxonomic sequence classification system

  Language:C++721273

• lh3/seqtk

  Toolkit for processing sequences in FASTA/Q formats

  Language:C1.4k306