Required scripts and data for the entire analysis in Pisupati et. al. 2018
scripts folder contains all the scripts used to generate the plots and analyse the data
Each genomes folder contains
- Repeat contigs after filtering (minimum 500bp) from RE.
- Pi values across windows for all the contigs after analysis
- Final table summary for the genome with depth and estimated half life
- Uploaded the data to github on 17-01-2017
Pisupati, R., Vergara, D., & Kane, N. C. Diversity and evolution of the repetitive genomic content in Cannabis sativa. BMC Genomics 19, 156 (2018)