Pinned Repositories
ausdex
A Python package for adjusting Australian dollars for inflation
dcodex
Software for manuscript analysis
django-crunch
A data processing orcestration tool
fastapp
A wrapper for fastai projects to create easy command-line inferfaces and manage hyper-parameter tuning
hespi
HErbarium Specimen sheet PIpeline
hierarchicalsoftmax
A Hierarchical Softmax Framework for PyTorch
introchain
Workshop material for `Large Language Model (LLM) pipelines using LangChain` at the AMSI BioInfoSummer 2024.
orthoflow
Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.
terrier
Classifier of Repeat
vorlagellm
Uses an LLM to determine which were plausible readings in the Vorlage of a translation of a text
rbturnbull's Repositories
rbturnbull/orthoflow
Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.
rbturnbull/dcodex
Software for manuscript analysis
rbturnbull/hierarchicalsoftmax
A Hierarchical Softmax Framework for PyTorch
rbturnbull/hespi
HErbarium Specimen sheet PIpeline
rbturnbull/terrier
Classifier of Repeat
rbturnbull/vorlagellm
Uses an LLM to determine which were plausible readings in the Vorlage of a translation of a text
rbturnbull/ausdex
A Python package for adjusting Australian dollars for inflation
rbturnbull/django-crunch
A data processing orcestration tool
rbturnbull/stemmadot
Visualization of STEMMA phylogenetic output
rbturnbull/supercat
A deep learning model for CT scan super-resolution.
rbturnbull/torchapp
A wrapper for PyTorch projects to create easy command-line inferfaces and manage hyper-parameter tuning
rbturnbull/corgi
Classifier for ORGanelles (Inter alia)
rbturnbull/cov3d
A deep learning model to detect the presence and severity of COVID19 in patients from CT-scans.
rbturnbull/djangocms-themata
A set of themes for Django CMS projects
rbturnbull/bayespub
Using LLMs to infer trends in Bayesian analysis in academic literature
rbturnbull/BioKIT
a versatile toolkit for processing and analyzing diverse types of sequence data
rbturnbull/dcodex_bible
Extension for DCodex to use Biblical Manuscripts
rbturnbull/dcodex_collation
Dcodex app to handle alignment of texts.
rbturnbull/drawyolo
Draws boxes on images from annotations in YOLO format
rbturnbull/framecat
Identifies frame catena from manuscript images
rbturnbull/gotoh
Aligns two sequences and returns the number of characters which match, mismatch, open gaps or extend gaps.
rbturnbull/kutub
A Django app to create an inventory of manuscript descriptions.
rbturnbull/lungmask
Automated lung segmentation in CT
rbturnbull/polytorch
Embeddings and loss functions for different data types
rbturnbull/seqbank
SeqBank is a powerful and flexible command-line application designed to simplify the management and processing of large DNA sequence datasets. Whether you're working with local sequence files, retrieving data from remote URLs, or integrating sequences from databases like RefSeq and DFam, SeqBank provides an efficient, user-friendly solution.
rbturnbull/snakemake
Rob Turnbull's fork of Snakemake to add citation management.
rbturnbull/thesis_data
The data to accompany Robert Turnbull's PhD thesis on Codex Sinaiticus Arabicus and its Family
rbturnbull/torchapp-cookiecutter
A cookiecutter project for generating fastapp projects.
rbturnbull/uread
A handwritten text recognition app
rbturnbull/yolocrop
Use a YOLO model to just predict the bounding box of an object and crop it.