rbturnbull

University of Melbourne

Pinned Repositories

ausdex
A Python package for adjusting Australian dollars for inflation
Language:Python2 1 103
dcodex
Software for manuscript analysis
Language:Python9 2 60
django-crunch
A data processing orcestration tool
Language:Python2 4 110
fastapp
A wrapper for fastai projects to create easy command-line inferfaces and manage hyper-parameter tuning
Language:Python4 3 10
hespi
HErbarium Specimen sheet PIpeline
Language:Python4 1 10
hierarchicalsoftmax
A Hierarchical Softmax Framework for PyTorch
Language:Python8 2 22
orthoflow
Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.
Language:HTML10 6 532
pairhmm
An implementation of Pair HMMs for sequence alignment analysis.
Language:Python2 1 00
pybtexris
A pybtex plugin for inputting and outputting RIS files
Language:Python2 1 10
stemmadot
Visualization of STEMMA phylogenetic output
Language:Python2 2 00

rbturnbull's Repositories

rbturnbull/orthoflow
Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.
Language:HTML10 6 532
rbturnbull/dcodex
Software for manuscript analysis
Language:Python9 2 60
rbturnbull/hierarchicalsoftmax
A Hierarchical Softmax Framework for PyTorch
Language:Python8 2 22
rbturnbull/hespi
HErbarium Specimen sheet PIpeline
Language:Python4 1 10
rbturnbull/ausdex
A Python package for adjusting Australian dollars for inflation
Language:Python2 1 103
rbturnbull/django-crunch
A data processing orcestration tool
Language:Python2 4 110
rbturnbull/stemmadot
Visualization of STEMMA phylogenetic output
Language:Python2 2 00
rbturnbull/supercat
A deep learning model for CT scan super-resolution.
Language:Python2 1 340
rbturnbull/torchapp
A wrapper for PyTorch projects to create easy command-line inferfaces and manage hyper-parameter tuning
Language:Python2 2 01
rbturnbull/cov3d
A deep learning model to detect the presence and severity of COVID19 in patients from CT-scans.
Language:Python1 2 01
rbturnbull/djangocms-themata
A set of themes for Django CMS projects
Language:HTML1 1 00
rbturnbull/terrier
Classifier of Repeat
Language:Python1 1 0
rbturnbull/vorlagellm
Uses an LLM to determine which were plausible readings in the Vorlage of a translation of a text
Language:Python1
rbturnbull/bayespub
Using LLMs to infer trends in Bayesian analysis in academic literature
Language:Python2 0
rbturnbull/BioKIT
a versatile toolkit for processing and analyzing diverse types of sequence data
Language:Python0 0
rbturnbull/corgi
Classifier for ORGanelles (Inter alia)
Language:Python1
rbturnbull/dcodex_bible
Extension for DCodex to use Biblical Manuscripts
Language:Python1 1
rbturnbull/dcodex_collation
Dcodex app to handle alignment of texts.
Language:Python1 3
rbturnbull/drawyolo
Draws boxes on images from annotations in YOLO format
Language:Python1 0
rbturnbull/framecat
Identifies frame catena from manuscript images
Language:Python1 0
rbturnbull/gotoh
Aligns two sequences and returns the number of characters which match, mismatch, open gaps or extend gaps.
Language:Cython
rbturnbull/kutub
A Django app to create an inventory of manuscript descriptions.
Language:Python
rbturnbull/lungmask
Automated lung segmentation in CT
Language:Python0 0
rbturnbull/polytorch
Embeddings and loss functions for different data types
Language:Python1 0
rbturnbull/seqbank
A database to quickly read and write DNA sequence data in numerical form.
Language:Python3 0
rbturnbull/snakemake
Rob Turnbull's fork of Snakemake to add citation management.
Language:HTML0 0
rbturnbull/thesis_data
The data to accompany Robert Turnbull's PhD thesis on Codex Sinaiticus Arabicus and its Family
Language:TeX1 0
rbturnbull/torchapp-cookiecutter
A cookiecutter project for generating fastapp projects.
Language:Python
rbturnbull/uread
A handwritten text recognition app
Language:Python
rbturnbull/yolocrop
Use a YOLO model to just predict the bounding box of an object and crop it.
Language:Python1 0