Pinned Repositories
Algorithms_and_data_structures
Python code for implementing different algorithms and data structures
AluI_accessibility_analysis
Custom MATLAB code for analyzing AluI cleavage data
bamR
Utilities for working wih bam files in R
Coding-Challenges-in-Python
Jupyter notebooks with Python problems and solutions. Pull requests that optimize these solutions are appreciated.
Compute_H3_averages
Detect_NDRs_and_flanking_nucleosomes
Detect the locations of the nucleosome depleted/free regions (NDR, NFR) and the flanking nucleosomes (+1/-1)
Misc_Jupyter_notebooks
Different examples using numpy, pandas, scikit-learn, etc.
plot2DO
A tool to assess the quality and distribution of genomic data
qMNase-seq
Custom MATLAB scripts used for analyzing quantitative MNase-seq data.
Workshop_Argentina_2018
Materials for the workshop on NGS tools - Argentina, November 2018
rchereji's Repositories
rchereji/plot2DO
A tool to assess the quality and distribution of genomic data
rchereji/qMNase-seq
Custom MATLAB scripts used for analyzing quantitative MNase-seq data.
rchereji/bamR
Utilities for working wih bam files in R
rchereji/Coding-Challenges-in-Python
Jupyter notebooks with Python problems and solutions. Pull requests that optimize these solutions are appreciated.
rchereji/Detect_NDRs_and_flanking_nucleosomes
Detect the locations of the nucleosome depleted/free regions (NDR, NFR) and the flanking nucleosomes (+1/-1)
rchereji/Algorithms_and_data_structures
Python code for implementing different algorithms and data structures
rchereji/AluI_accessibility_analysis
Custom MATLAB code for analyzing AluI cleavage data
rchereji/Compute_H3_averages
rchereji/Misc_Jupyter_notebooks
Different examples using numpy, pandas, scikit-learn, etc.
rchereji/Workshop_Argentina_2018
Materials for the workshop on NGS tools - Argentina, November 2018
rchereji/ISLR-python
An Introduction to Statistical Learning (James, Witten, Hastie, Tibshirani, 2013): Python code
rchereji/kaggle-solutions
🏅 Collection of Kaggle Solutions and Ideas 🏅
rchereji/Nucleosome_spacing_estimation
Custom MATLAB code for analyzing yeast MNase-seq data in order to estimate nucleosome spacing.
rchereji/rchereji.github.io
Razvan V. Chereji
rchereji/SELEX
rchereji/test-repo
This is a test repo