rcsb/py-rcsb_workflow

Python workflow entry points for database and search tools

py-rcsb_workflow

Introduction

RCSB Python workflow entry points for data processing and ETL/ELT operations.

Installation

Download the library source software from the project repository:

git clone  --recurse-submodules https://github.com/rcsb/py-rcsb_workflow.git

# or to make sure the submodules are updated --
git submodule update --recursive --init
git submodule update --recursive --remote

Optionally, run test suite (Python versions 3.8) using setuptools or tox:

  pip install -r requirements.txt
  python setup.py test

or simply run:

  tox

Installation is via the program pip. To run tests from the source tree, the package must be installed in editable mode (i.e. -e):

pip install -e .