The aim of this macro is to crop large stacks of vertical microfluidic channels into smaller chunk.
Drag and drop the file into Fiji and press Run.
This macro requires a fresh install of Fiji. The program expect CZI files with multiple series of Zstack.
The macro works in batch mode and will not display any result for memory purpose.
MIP and ZIP of the ROIs are saved for QC.
(0.0.1) Automatic detection of maxima after MIP
(0.1.0) Add Dialog box
(0.2.1) Open multiseries file
(0.2.2) Reduce Zdimension by downsampling