on startup display plugin version and version of intgerated RDKit in log
pi-at-git opened this issue · 7 comments
in neo4j.log and debug.log you should see a message like
2020-10-25 21:03:27.296+0000 INFO [system] Neo4j rdkit plugin version: 1.0.0 using rdkit version: 2020.03.1, rdkit build: Linux|5.3.0-46-generic|UNIX|GNU|64-bit
grep rdkit logs/debug.log
yields
2020-10-28 20:20:04.203+0000 INFO [o.n.i.d.DiagnosticsManager] [classpath] /var/lib/neo4j/plugins/rdkit-index-1.1.0-SNAPSHOT-4.1.jar
2020-10-28 20:20:04.429+0000 INFO [o.n.i.d.DiagnosticsManager] rdkit.index.sanitize=true
would be great if rdkit version was also displayed
have you checked in neo4j.log? I'm getting
logs/neo4j.log:2020-10-27 10:51:11.493+0000 INFO [system] Neo4j rdkit plugin version: 1.0.0 using rdkit version: 2020.03.1, rdkit build: Linux|5.3.0-46-generic|UNIX|GNU|64-bit there.
I started neo4j with the following command:
docker run --rm -p 127.0.0.1:7474:7474 -p 127.0.0.1:7687:7687
-v ~/docker_vols_neo4j_4.1.3/plugins:/var/lib/neo4j/plugins
-v ~/docker_vols_neo4j_4.1.3/data:/var/lib/neo4j/data
-e NEO4J_AUTH=none
-e NEO4J_dbms_memory_pagecache_size=8G
-e NEO4J_dbms_memory_heap_max__size=16G
-e NEO4J_rdkit_index_sanitize=true
--user=$(id -u):$(id -g)
neo4j:4.1.3
the log-folder in the container has only /var/lib/neo4j/logs/debug.log, unable to find neo4j.log:
find / -name "neo4j.log" yields nothing
In docker land, logs/neo4j.log is not there, instead it's the docker logs itself.
Please check using docker logs <containername>
supi@berzerQ:~ docker ps
CONTAINER ID IMAGE COMMAND CREATED STATUS PORTS NAMES
2894c14445c4 neo4j:4.1.3 "/sbin/tini -g -- /d…" 2 minutes ago Up 2 minutes 127.0.0.1:7474->7474/tcp, 7473/tcp, 127.0.0.1:7687->7687/tcp admiring_lamport
supi@berzerQ:~ docker logs admiring_lamport
Directories in use:
home: /var/lib/neo4j
config: /var/lib/neo4j/conf
logs: /logs
plugins: /var/lib/neo4j/plugins
import: /var/lib/neo4j/import
data: /var/lib/neo4j/data
certificates: /var/lib/neo4j/certificates
run: /var/lib/neo4j/run
Starting Neo4j.
APOC couln't set a URLStreamHandlerFactory since some other tool already did this (e.g. tomcat). This means you cannot use s3:// or hdfs:// style URLs in APOC. This is caused by a limitation of the JVM which we cannot fix.
2020-10-28 21:22:30.632+0000 INFO Starting...
2020-10-28 21:22:33.357+0000 INFO ======== Neo4j 4.1.3 ========
2020-10-28 21:22:42.940+0000 INFO Performing postInitialization step for component 'security-users' with version 2 and status CURRENT
2020-10-28 21:22:42.940+0000 INFO Updating the initial password in component 'security-users'
2020-10-28 21:22:44.867+0000 INFO Called db.clearQueryCaches(): Query cache already empty.
2020-10-28 21:22:44.938+0000 INFO Bolt enabled on 0.0.0.0:7687.
2020-10-28 21:22:45.959+0000 INFO Remote interface available at http://localhost:7474/
2020-10-28 21:22:45.961+0000 INFO Started.
unfortunately, no hint for rdkit version & co - do I do something wrong?
works as expected with new version