rdsza
Research Scientist : Computer Vision | Electron Microscopy | Machine Learning
Morgridge Institute for ResearchMadison
Pinned Repositories
AlphaCryo4D
A deep manifold learning framework for 4D cryo-EM data processing for simultaneous determination of high-resolution structures and dynamics of macromolecules.
alphafold
Open source code for AlphaFold.
BioEM
GPU accelerating computing for Bayesian inference of electron microscopy images. BioEM is a publicly available software that enables the characterization of structural models with respect to individual electron microscopy images.
cisTEM
cryodrgn
Neural networks for cryo-EM reconstruction
machine_learning_complete
A comprehensive machine learning repository containing 30+ notebooks on different concepts, algorithms and techniques.
ManifoldEM_Matlab
ManifoldEM is a stand-alone MATLAB program to extract continuous conformational changes from single-particle cryo-electron microscopy data. It is developed in the Ourmazd research group at the University of Wisconsin Milwaukee (UWM) (https://sites.uwm.edu/ourmazd/).
pyem
Python programs for electron microscopy
specvols
rdsza's Repositories
rdsza/cryodrgn
Neural networks for cryo-EM reconstruction
rdsza/AlphaCryo4D
A deep manifold learning framework for 4D cryo-EM data processing for simultaneous determination of high-resolution structures and dynamics of macromolecules.
rdsza/alphafold
Open source code for AlphaFold.
rdsza/BioEM
GPU accelerating computing for Bayesian inference of electron microscopy images. BioEM is a publicly available software that enables the characterization of structural models with respect to individual electron microscopy images.
rdsza/cisTEM
rdsza/machine_learning_complete
A comprehensive machine learning repository containing 30+ notebooks on different concepts, algorithms and techniques.
rdsza/ManifoldEM_Matlab
ManifoldEM is a stand-alone MATLAB program to extract continuous conformational changes from single-particle cryo-electron microscopy data. It is developed in the Ourmazd research group at the University of Wisconsin Milwaukee (UWM) (https://sites.uwm.edu/ourmazd/).
rdsza/pyem
Python programs for electron microscopy
rdsza/azureMLPy
rdsza/cider
PyTorch implementation of CIDER (How to exploit hyperspherical embeddings for out-of-distribution detection), ICLR 2023
rdsza/cryoAI
rdsza/cryohub
IO hub for Cryo-EM, Cryo-ET and subtomogram averaging data.
rdsza/DiffModels
rdsza/HandsONML2
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.
rdsza/localcolabfold
ColabFold on your local PC
rdsza/MachineLearningTutorials
PyTorch Tutorials
rdsza/matchms1
Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.
rdsza/openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
rdsza/py_mdanalysis
MDAnalysis is a Python library to analyze molecular dynamics simulations.
rdsza/Pytorch-UNet
PyTorch implementation of the U-Net for image semantic segmentation with high quality images
rdsza/relion
Image-processing software for cryo-electron microscopy
rdsza/Sentiment-Analysis-of-a-book-through-Unsupervised-Learning
rdsza/SignalProcPy
rdsza/spatial-VAE
Source code for "Explicitly disentangling image content from translation and rotation with spatial-VAE" - NeurIPS 2019
rdsza/SuMD
Python code to run Supervised Molecular Dynamics (SuMD) simulations
rdsza/topaz
Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.
rdsza/Transformers-Tutorials
This repository contains demos I made with the Transformers library by HuggingFace.
rdsza/triton
Development repository for the Triton language and compiler
rdsza/unet
U-Net Biomedical Image Segmentation
rdsza/webpage
Academic personal websites, forked from academicpages