Pinned Repositories
A.thaliana_CLR_vs_HiFi
alignment-and-variant-calling-tutorial
basic walk-throughs for alignment and variant calling from NGS sequencing data
applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2018
appliedgenomics2018
Materials for Spring 2018 Applied Genomics Course
awesome-bioinformatics
Collection of bioinformatics links - run by the WUBSyB community
awesome-R
A curated list of awesome R packages, frameworks and software.
biotools
A list of useful bioinformatics resources
reachsagaya's Repositories
reachsagaya/A.thaliana_CLR_vs_HiFi
reachsagaya/alignment-and-variant-calling-tutorial
basic walk-throughs for alignment and variant calling from NGS sequencing data
reachsagaya/appliedgenomics2018
Materials for Spring 2018 Applied Genomics Course
reachsagaya/awk-sed
reachsagaya/bioinformatics-one-liners
Bioinformatics one liners from Ming Tang
reachsagaya/bovine-graphs
Integrate multiple genome assemblies into a pangenome graph
reachsagaya/Code_Ae_tauschiiDiversity
Code and scripts for Ae. tauschii diversity analysis
reachsagaya/Data-Science--Cheat-Sheet
Cheat Sheets
reachsagaya/datastructures2018
Materials for JHU Data Structures 2018
reachsagaya/FriendsDontLetFriends
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
reachsagaya/hgsvc
building variation graphs from hgsvc data
reachsagaya/jasen
Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.
reachsagaya/nano_diagnositcs
Documentation of analyses and commands used as part of the PhD project investigating next generation diagnostics
reachsagaya/pbbioconda
PacBio Secondary Analysis Tools on Bioconda
reachsagaya/PlantsAndPython
reachsagaya/Probabilistic-Programming-and-Bayesian-Methods-for-Hackers
aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)
reachsagaya/Python
All Algorithms implemented in Python
reachsagaya/python-data-analysis_JulinM
reachsagaya/Python-for-Bioinformatics
Python for Bioinformatics consist of a variety of python programmes,frequently used by bioinformaticians while handling biological data especially raw NGS data.
reachsagaya/PythonForBioinformatics
This repository will be helpful to start using python for your Bioinformatics projects.
reachsagaya/R-for-Plant-Breeding
R for Plant Breeding is open source resource to lear the Plant Breeding and Genetics related data analysis and visualizations
reachsagaya/RethinkingV2_Julin.Maloof
Repository for Statistical Rethinking V2 from Julin.Maloof
reachsagaya/sagaya.github.io
reachsagaya/snakepipes
Customizable workflows based on snakemake and python for the analysis of NGS data
reachsagaya/stat_rethinking_2022
Statistical Rethinking course winter 2022
reachsagaya/sv-genotyping-paper
reachsagaya/sv-pipeline
Pipeline for structural variation detection in cohorts
reachsagaya/SV_Benchmark_CMRG
Structural variant benchmark of challenging medically relevant genes
reachsagaya/SVHack_assemblyvmapping
reachsagaya/vg
tools for working with genome variation graphs