Pinned Repositories
container
:construction: Repository for files for running a Reactome production-like environment inside a docker container. Currently, this project's status is "Work-In-Progress". :construction:
content-service
The new Reactome REST API to access the data
descartes_rpa
graph-core
Models the Reactome knowledgebase into a interconnected graph
graph-importer
Converts the Reactome knowledgebase into a interconnected graph
pwp-browser
A tool for visualising and interacting with pathways data
reactome2py
python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
ReactomeGraph4R
R package for interfacing with a Reactome Graph Database
ReactomeGSA
R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
ReactomeGSA-tutorials
Tutorials on how to use the ReactomeGSA R package.
Reactome's Repositories
reactome/ReactomeGSA
R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
reactome/graph-core
Models the Reactome knowledgebase into a interconnected graph
reactome/pwp-browser
A tool for visualising and interacting with pathways data
reactome/content-service
The new Reactome REST API to access the data
reactome/interaction-exporter
Exports molecular interactions inferred from Reactome content
reactome/pwp-diagram
GWT widget to visualise Reactome pathways
reactome/analysis-core
Pathway enrichment and expression analysis as well as species comparison tool
reactome/biomodels-mapper
Mapping BioModels to Reactome using analysis results
reactome/CuratorTool
The Reactome Java API for the relational database and the Curator Tool
reactome/data-export
Creates the files to be placed in the download section
reactome/data-content
reactome/diagram-converter
Generates a set of JSON files to be consumed by the Diagram Viewer
reactome/fireworks-layout
Custom radial layout algorithm to visualise Reactome pathways in a space-filling graph
reactome/reactome_chatbot
This is Reactomes chatbot to its database and search index
reactome/release-data-exporter
Data-release-pipeline: Data exports for submission to NCBI, UCSC, and Europe PMC
reactome/release-update-dois
Data-release-pipeline: Updates DOIs of pathways that were updated significantly between releases (these pathways will be tagged as needing a value in their doi attribute)
reactome/search-core
reactome/statistics-generator
Cypher queries to generate automatically release statistics
reactome/release-jenkins-utils
Data-release-pipeline: Utilities repository that contains files for initializing Release via Jenkins and general-use scripts used in Release
reactome/graph-add-links
reactome/icon-validator
Validate the structure and values of icon files
reactome/Pathway-Exchange
Pathway Exchange Code Repository
reactome/PathwayBrowser
reactome/release-download-directory
Data-release-pipeline: Generation of files for the Reactome website download directory
reactome/release-orthopairs
Data-release-pipeline: Retrieval of homology data (human to other species) from PANTHER (http://www.pantherdb.org/)
reactome/release-update-stable-ids
Data-release-pipeline: Updates stable identifiers of manually curated instances
reactome/release-verifier-lib
A library of common functions for verifying release steps have run successfully
reactome/release_gocam
This pipeline generates go-cam ttl files from biopax and validates them
reactome/sbml-exporter
reactome/search-indexer