Pinned Repositories
container
:construction: Repository for files for running a Reactome production-like environment inside a docker container. Currently, this project's status is "Work-In-Progress". :construction:
content-service
The new Reactome REST API to access the data
descartes_rpa
graph-core
Models the Reactome knowledgebase into a interconnected graph
graph-importer
Converts the Reactome knowledgebase into a interconnected graph
reactome2py
python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
ReactomeGraph4R
R package for interfacing with a Reactome Graph Database
ReactomeGSA
R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
ReactomeGSA-tutorials
Tutorials on how to use the ReactomeGSA R package.
Release
Code and website structure for a release server
Reactome's Repositories
reactome/content-service
The new Reactome REST API to access the data
reactome/Website
Contains the code and configuration for the website
reactome/analysis-service
A RESTful API to access pathway analysis tools
reactome/gsa-backend
Backend code of the Kubernetes based ReactomeGSA Analysis System
reactome/analysis-core
Pathway enrichment and expression analysis as well as species comparison tool
reactome/CuratorTool
The Reactome Java API for the relational database and the Curator Tool
reactome/analysis-report
reactome/data-content
reactome/data-release-pipeline
The next generation of the Reactome data release pipeline.
reactome/event-pdf
Generates the Reactome book
reactome/gsa-frontend
reactome/release-go-update
Data-release-pipeline: Synchronization of gk_central GO instances with Gene Ontology (http://geneontology.org/)
reactome/curation-query
Projects for custom queries to the Reactome curation database
reactome/elk-setup-v2
reactome/graph-add-links
reactome/interaction-importer
This is for importing Intact data into the neo4j database
reactome/ngx-reactome-base
reactome/Pathway-Exchange
Pathway Exchange Code Repository
reactome/reaction-exporter
reactome/reactome-schemas
reactome/reactome_chatbot
This is Reactomes chatbot to its database and search index
reactome/release-biomodels
Data-release-pipeline: Insertion of BioModels identifiers cross-references (data generated by https://github.com/reactome/biomodels-mapper) for Pathway instances
reactome/release-chebi-update
Data-release-pipeline: Synchronization of gk_central Reference Molecule instances with ChEBI (https://www.ebi.ac.uk/chebi/)
reactome/release-cosmic-update
Code for updating COSMIC identifiers.
reactome/release-download-directory
Data-release-pipeline: Generation of files for the Reactome website download directory
reactome/release-jenkins-utils
Data-release-pipeline: Utilities repository that contains files for initializing Release via Jenkins and general-use scripts used in Release
reactome/release-orthoinference
Data-release-pipeline: Orthology projection of human reactions and pathways to non-human species
reactome/release-orthopairs
Data-release-pipeline: Retrieval of homology data (human to other species) from PANTHER (http://www.pantherdb.org/)
reactome/release-uniprot-update
reactome/release-update-stable-ids
Data-release-pipeline: Updates stable identifiers of manually curated instances