Welcome to the CCDL Repo!!
This will be a simple, and fun pipeline to run.
To begin, start up your conda virtual environment:
conda env create -f environment.yml
conda activate ccdl or source activate ccdl
To run the pipeline:
snakemake get_data then
snakemake targets -j 100
This might take some time, and a lot of memory, so be patient
When you want to deactivate your environment, simply type:
conda deactivate or source deactivate
The conda docs are super helpful!