The Reich Lab at UMass-Amherst

Amherst, MA

Pinned Repositories

ALERT
Implementation of the ALERT algorithm for detecting the onset of influenza season.
Language:R9 4 174
covid19-forecast-hub
Projections of COVID-19, in standardized format
Language:Jupyter Notebook447 25 314326
covidData
Versioned covid data
Language:HTML8 4 619
covidHubUtils
Utility functions for the COVID-19 forecast hub
Language:HTML17 6 20116
d3-foresight
Interactive visualization for time series forecasts
Language:JavaScript23 4 576
flusight
Influenza forecasts visualizer
Language:JavaScript41 7 5911
ncov
analyses related to nCoV-2020 outbreak
Language:TeX33 15 114
reichlab-python-template
A skeleton Python setup for new projects
Language:Python1 3 30
reichlab.github.io
The website for the Reich Lab @ UMass-Amherst.
Language:HTML18 7 6348
variant-nowcast-hub
A repository to store COVID-19 variant nowcasts collected as a modeling hub.
Language:R15 5 5210

The Reich Lab at UMass-Amherst's Repositories

reichlab/covid19-forecast-hub
Projections of COVID-19, in standardized format
Language:Jupyter Notebook447 25 314326
reichlab/reichlab.github.io
The website for the Reich Lab @ UMass-Amherst.
Language:HTML18 7 6348
reichlab/variant-nowcast-hub
A repository to store COVID-19 variant nowcasts collected as a modeling hub.
Language:R15 5 5210
reichlab/distfromq
Reconstruct a distribution from a collection of quantiles
Language:HTML7 2 222
reichlab/flusion
Influenza forecasting using data fusion
Language:Jupyter Notebook2 4 102
reichlab/nba-predictions
Language:R2 3 5
reichlab/decisions
A public record of decisions made for lab projects
1
reichlab/flusion-manuscript
Language:TeX1 3 10
reichlab/hub-infrastructure-experiments
experiments about hub infrastructure
Language:HTML1 2 22
reichlab/reichlab-python-template
A skeleton Python setup for new projects
Language:Python1 3 30
reichlab/variant-nowcast-model-dev-retro
Retrospective model dev for UMass models for variant-nowcast-hub
Language:R1 3 6
reichlab/cladetime
Python interface for accessing Nextstrain SARS-CoV-2 sequence and clade data
Language:Python0 4 350
reichlab/covidhub-dashboard
Dashboard for the CDC's COVID-19 Forecast Hub
reichlab/flusight-dashboard
Dashboard for CDC's FluSight prediction exercise.
reichlab/FluSight-forecast-hub
FluSight-forecast-hub fork for cloud onboarding
Language:R0 0
reichlab/flusion-experiments
Influenza forecasting using data fusion
Language:Jupyter Notebook
reichlab/flusion-models
Models for influenza forecasting using data fusion
Language:Python
reichlab/get-covid-clade-counts
Create virus clade count data and save to an S3 Bucket using functionality from virus-clade-utils
Language:Python
reichlab/iddata
Python module for accessing infectious disease data
Language:Python
reichlab/idforecastutils
utility functions for various forecasting models, exercises, and rounds
Language:R3 9
reichlab/idmodels
Infectious disease models in Python
Language:Python2 0
reichlab/jacques
Just Another Conditional Quantile Estimator
Language:Jupyter Notebook4 1
reichlab/jacques-flu
Using jacques method to forecast flu cases
Language:R
reichlab/operational-models
Repository for automating runs of operational disease forecasting models.
Language:Python
reichlab/postpredict
Postprocess predictive distributions
Language:Python
reichlab/predtimechart
Language:JavaScript3 421
reichlab/reichlab-repo-utils
Script to standardize permissions and branch settings for Reichlab repos
Language:Python2 2
reichlab/trendsEnsemble
Language:R
reichlab/variant-nowcast-hub-dashboard
Dashboard pages and analyses for the US SARS-CoV-2 Variant Nowcast Hub
Language:HTML
reichlab/variant-scoring
Code and vignettes around scoring variant nowcasts derived from the SARS-CoV-2 Variant Nowcast Hub.