Pinned Repositories
ActiveDriverDB
ActiveDriverDB
ActiveDriverWGSR
ActiveDriverWGSR is an R package for discovery of cancer driver genes and non-coding elements in whole genome sequencing data
ActivePathways
Integrative pathway enrichment analysis of multivariate omics data
CA2M
Chromatin accessibility of primary human cancers ties regional mutational processes with tissues of origin (repository for paper)
CA2M_v2
CA2M: chromatin accessibility and mutations in cancer genomes
CNNClassifier
Convolutional Neural Net for Sequence Classification
DPM_publication_code
DPM: code and input files for the publication
lncRNAs_TCGA
Code I have used throughout my Masters analyzing TCGA clinical and RNA-Seq datasets to discover lncRNA prognostic markers
needleplot
Another needleplot for mutation data, used by ActiveDriverDB
shiny-web-form
A web form created as a shiny app for literature analysis
reimandlab's Repositories
reimandlab/ActivePathways
Integrative pathway enrichment analysis of multivariate omics data
reimandlab/ActiveDriverDB
ActiveDriverDB
reimandlab/ActiveDriverWGSR
ActiveDriverWGSR is an R package for discovery of cancer driver genes and non-coding elements in whole genome sequencing data
reimandlab/DPM_publication_code
DPM: code and input files for the publication
reimandlab/CA2M_v2
CA2M: chromatin accessibility and mutations in cancer genomes
reimandlab/lncRNAs_TCGA
Code I have used throughout my Masters analyzing TCGA clinical and RNA-Seq datasets to discover lncRNA prognostic markers
reimandlab/needleplot
Another needleplot for mutation data, used by ActiveDriverDB
reimandlab/CA2M
Chromatin accessibility of primary human cancers ties regional mutational processes with tissues of origin (repository for paper)
reimandlab/CNNClassifier
Convolutional Neural Net for Sequence Classification
reimandlab/shiny-web-form
A web form created as a shiny app for literature analysis
reimandlab/ActiveDriver
reimandlab/GEP
reimandlab/mExplorer
reimandlab/muts-needle-plot
A needle plot for mutation data
reimandlab/PPI_network_based_gene_type_prediction_model
This is the repository for Reagan (Gen) LI's BCB430 summer project.
reimandlab/reimandlab.github.io
reimandlab/RM2
Regression Models for Localised Mutations
reimandlab/simpsonlab.github.io
reimandlab/plotwistR
reimandlab/rmimp
Predicting the impact of mutations on kinase–substrate phosphorylation
reimandlab/ShinyActivePathways
A shiny web server that performs ActivePathways and display results in Enrichment map