ReMap
List of repositories for the ReMap projects. ReMap is an integrative analysis of transcriptional regulators for DNA-binding experiments from public datasets
Pinned Repositories
peakMerge
remap-docker-images
Repository for docker images that are hosted on docker hub
remap-pipeline
As the ReMap project expands dramatically and regulatory catalogs for other species are requested, it becomes essential to enable joint efforts between the ReMap team and external teams. This is essential for future collaborative production efforts. Briefly, our pipelines uses SnakeMake either in a Conda or Singularity environment depending on the HPC resources, where Torque and Slurm managers are both supported
remap-rest
Language agnostic RESTful data access to ReMap data over HTTP
ReMapEnrich
ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnrich provide functions to import any in-house catalogue, automate and plot the enrichment analysis for genomic regions.
ReMap's Repositories
remap-cisreg/ReMapEnrich
ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnrich provide functions to import any in-house catalogue, automate and plot the enrichment analysis for genomic regions.
remap-cisreg/remap-pipeline
As the ReMap project expands dramatically and regulatory catalogs for other species are requested, it becomes essential to enable joint efforts between the ReMap team and external teams. This is essential for future collaborative production efforts. Briefly, our pipelines uses SnakeMake either in a Conda or Singularity environment depending on the HPC resources, where Torque and Slurm managers are both supported
remap-cisreg/peakMerge
remap-cisreg/remap-docker-images
Repository for docker images that are hosted on docker hub
remap-cisreg/remap-rest
Language agnostic RESTful data access to ReMap data over HTTP