Pinned Repositories
adv-r
Advanced R programming: a book
Aire_target
ConsensusClusterPlus
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/ConsensusClusterPlus.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=ConsensusClusterPlus.
formatR
Format R Code Automatically
ggvis
Interactive grammar of graphics for R
opentsdb
A scalable, distributed Time Series Database.
RepEnrich
RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.
reshape
An R package to flexible rearrange, reshape and aggregate data
RSEM
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
shiny-examples
renzhonglu's Repositories
renzhonglu/Aire_target
renzhonglu/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
renzhonglu/awesome-genome-visualization
A list of interesting genome browser or genome-browser-like implementations
renzhonglu/AwesomeGenomics
Cancer Data Science's go to place for excellent genomics tools and packages
renzhonglu/CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
renzhonglu/ChemmineR
Cheminformatics Toolkit for R
renzhonglu/conda
OS-agnostic, system-level binary package manager and ecosystem
renzhonglu/cyclicpepedia
renzhonglu/diamond
Accelerated BLAST compatible local sequence aligner.
renzhonglu/gephi
Gephi - The Open Graph Viz Platform
renzhonglu/GWASTutorial
GWAS Tutorial for Beginners
renzhonglu/HighFold
renzhonglu/idr
IDR
renzhonglu/leafcutter
Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
renzhonglu/Logical_modelling_pipeline
Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, developed by the Computational Systems Biology of Cancer group in Bioinformatics Laboratory of Institut Curie (Paris)
renzhonglu/MR-tutorial
Tutorial for running Mendelian Randomization analysis using R
renzhonglu/NHS_R_Advanced_Modelling_Supervised_ML
Supervised ML tutorials for the NHS-R community
renzhonglu/psichomics
Interactive R package to quantify, analyse and visualise alternative splicing data
renzhonglu/ReactionMiner
Tool to predict (bio)chemical reactions using graph mining.
renzhonglu/rmats-turbo
renzhonglu/rnacocktail
renzhonglu/Rtsne
R wrapper for Van der Maaten's Barnes-Hut implementation of t-Distributed Stochastic Neighbor Embedding
renzhonglu/safe-java
Spatial Analysis of Functional Enrichment (SAFE)
renzhonglu/scikit-learn
scikit-learn: machine learning in Python
renzhonglu/scRNA-tools
Table of software for the analysis of single-cell RNA-seq data.
renzhonglu/SpliceTools
renzhonglu/SUPPA
SUPPA2: Fast quantification of differential splicing
renzhonglu/tftargets
:dart: Human transcription factor target genes.
renzhonglu/TPMCalculator
TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files
renzhonglu/xMWAS