renzilin
bioinformatics and biomedical engineering PhD
Northeast Normal UniversityChangchun, Jilin Prov., China
Pinned Repositories
Codon_Optimization
https://www.nature.com/articles/s41598-020-74091-z#Tab1
CodonBERT
CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
THPLM
A sequence-based deep learning framework for predicting protein stability changes upon point mutations using pretrained protein language model
PyTorchZeroToAll
Simple PyTorch Tutorials Zero to ALL!
NanoForenSTR
Repeat quantification for reads from ForenSeq Kit
NanoTime
A mini tool for nanopore reads extraction based on the start time of sequencing
NASTRA
Innovative Short Tandem Repeat Analysis through Cluster-Based Structure-Aware Algorithm in Nanopore Sequencing Data
PyRosetta.notebooks
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
strspy
STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed specifically for long-read sequencing reads such as from Oxford nanopore technology (ONT) and PacBio.
visNano
A tool for making summary of long reads
renzilin's Repositories
renzilin/NASTRA
Innovative Short Tandem Repeat Analysis through Cluster-Based Structure-Aware Algorithm in Nanopore Sequencing Data
renzilin/visNano
A tool for making summary of long reads
renzilin/NanoForenSTR
Repeat quantification for reads from ForenSeq Kit
renzilin/NanoTime
A mini tool for nanopore reads extraction based on the start time of sequencing
renzilin/PyRosetta.notebooks
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
renzilin/strspy
STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed specifically for long-read sequencing reads such as from Oxford nanopore technology (ONT) and PacBio.