reptalex
I'm a mathematical biologist with a soft spot for statistics and mathematical finance.
Selva Analytics, LLCBozeman, Montana
Pinned Repositories
BBS
Code for BBS fluctuation analysis
BirdPhylofactor
Models for phylofactoring bird data
COVID_ERL
Analysis of epidemic resistance lines and endpoints for COVID epidemics
COVID_fast_v_slow
Script for the analysis of COVID confirmed count data & testing fast vs. slow epidemic hyotheses
covid_r_v_D
dendromap
Mapping time-scaled reference trees to microbial phylogenies
EarlyWuhan
Early outbreak medical alerts & contact tracing biases
NYC_BA2_dashboard
Dashboard of short-term forecasts for the New York City BA.2 outbreak
phylofactor
SARS2_Reverse_Genetics
phylogenomic analysis of restriction sites & reverse genetic systems
reptalex's Repositories
reptalex/phylofactor
reptalex/SARS2_Reverse_Genetics
phylogenomic analysis of restriction sites & reverse genetic systems
reptalex/covid_r_v_D
reptalex/EarlyWuhan
Early outbreak medical alerts & contact tracing biases
reptalex/NYC_BA2_dashboard
Dashboard of short-term forecasts for the New York City BA.2 outbreak
reptalex/BBS
Code for BBS fluctuation analysis
reptalex/BirdPhylofactor
Models for phylofactoring bird data
reptalex/COVID_ERL
Analysis of epidemic resistance lines and endpoints for COVID epidemics
reptalex/COVID_fast_v_slow
Script for the analysis of COVID confirmed count data & testing fast vs. slow epidemic hyotheses
reptalex/dendromap
Mapping time-scaled reference trees to microbial phylogenies
reptalex/Generalized-Phylofactorization-Scripts-and-Workspaces
Scripts and Workspaces to replicate analyses in "Phylofactorization: a graph partitioning algorithm to identify phylogenetic scales in ecological data"
reptalex/PercolationSpillover
Code for simulation and analysis of spillover count datasets
reptalex/phylodt
metapopulation phylodynamic simulations with cross reactivity
reptalex/phylogenetic-tutorials
reptalex/q2-phylofactor
reptalex/voc_outbreak_time
Common duration SARS-CoV-2 outbreaks caused by VOCs
reptalex/WrightFisher
R package for simulation and CVT-testing of Wright-Fisher Process