Under Construction, does not work
Given the DNA sequence, predicts a set of likely solvents for that protein.
Protexystis is a deep neural network, trained on PDB data, that predicts the solvents that are most likely to crystallize the protein sequence specified in a fasta file.
- install package with
pip install protexystis. - run prediction with
protex sequence.fa. The output is a list of predicted solvents. sequence.fa is a dna? or protein? sequence.
- clone the repo
- use the scripts in the
rundirectory to- Get the data from PDB
- Sanitize the data
- Train the model
- Update the package with new training data
- Use maintainernotes to publish package