rexxxx1234

rexxxx1234's Stars

• sjgosai/boda2

  Computational Optimization of DNA Activity (CODA)

  Language:Python297

• SWivid/F5-TTS

  Official code for "F5-TTS: A Fairytaler that Fakes Fluent and Faithful Speech with Flow Matching"

  Language:Python6.1k683

• hongtaoh/cv_emulate

  Academic CVs that you can emulate

  Language:TeX36345

• lucidrains/alphafold3-pytorch

  Implementation of Alphafold 3 in Pytorch

  Language:Python1.2k138

• NVIDIA/RULER

  This repo contains the source code for RULER: What’s the Real Context Size of Your Long-Context Language Models?

  Language:Python66244

• terry-r123/RNABenchmark

  BEACON: Benchmark for Comprehensive RNA Tasks and Language Models

  Language:Python141

• JonasGeiping/cramming

  Cramming the training of a (BERT-type) language model into limited compute.

  Language:Python1.3k100

• PiotrNawrot/nanoT5

  Fast & Simple repository for pre-training and fine-tuning T5-style models

  Language:Python96572

• lucidrains/MEGABYTE-pytorch

  Implementation of MEGABYTE, Predicting Million-byte Sequences with Multiscale Transformers, in Pytorch

  Language:Python62052

• evolutionaryscale/esm

  Language:Python1.2k139

• EleutherAI/lm-evaluation-harness

  A framework for few-shot evaluation of language models.

  Language:Python6.8k1.8k

• apeterswu/Awesome-Bio-Foundation-Models

  A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.

  1158

• LucaOne/LucaOne

  The LucaOne’s code, including model code and pre-training code.

  Language:Python14721

• vllm-project/vllm

  A high-throughput and memory-efficient inference and serving engine for LLMs

  Language:Python29.4k4.4k

• wukevin/proteinclip

  Contrastive learning harmonizing protein language models and natural language models

  Language:Python225

• kyegomez/AlphaFold3

  Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

  Language:Python73597

• jiaweizzhao/GaLore

  GaLore: Memory-Efficient LLM Training by Gradient Low-Rank Projection

  Language:Python1.4k147

• unslothai/unsloth

  Finetune Llama 3.2, Mistral, Phi & Gemma LLMs 2-5x faster with 80% less memory

  Language:Python17.6k1.2k

• MAGICS-LAB/DNABERT_S

  DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models

  Language:Python6813

• RyanWangZf/BioBridge

  ICLR'24 | BioBridge: Bridging Biomedical Foundation Models via Knowledge Graphs

  Language:Jupyter Notebook628

• McGill-NLP/llm2vec

  Code for 'LLM2Vec: Large Language Models Are Secretly Powerful Text Encoders'

  Language:Python1.2k93

• bowang-lab/IntegrAO

  Integrate Any Omics: Towards genome-wide data integration for patient stratification

  Language:Jupyter Notebook62

• Genentech/polygraph

  Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of regulatory elements.

  Language:Jupyter Notebook27

• a96123155/UTR-LM

  Language:Jupyter Notebook6914

• seanrjohnson/protein_gibbs_sampler

  Gibbs sampling for generating protein sequences

  Language:Python477

• seanrjohnson/protein_scoring

  Generating and scoring novel enzyme sequences with a variety of models and metrics

  Language:Jupyter Notebook6011

• Crystalcareai/BTX

  Language:Python82

• axolotl-ai-cloud/axolotl

  Go ahead and axolotl questions

  Language:Python7.8k863

• PKU-YuanGroup/ProLLaMA

  A Protein Large Language Model for Multi-Task Protein Language Processing

  Language:Python13519

• taokz/BiomedGPT

  BiomedGPT: A Generalist Vision-Language Foundation Model for Diverse Biomedical Tasks

  Language:Python52059