reynoldsk
Systems biologist, bacterial geneticist and protein engineer
University of Texas Southwestern Medical CenterDallas, TX
Pinned Repositories
Evolutionary_Protein_Interaction_Conjecture
allostery-in-dhfr
Code that performs analysis of deep mutational scanning data for an allosteric DHFR-LOV2 fusion.
ContinuousEpistasis
Data analysis and code for Otto et al, "A continuous epistasis model for predicting growth rate given combinatorial variation in gene expression and environment"
CryptochromeSCA
SCA for the Cryptochrome (CRY)/Photolyase family.
dhfr-tyms-epistasis
Analysis of DHFR deep mutational scanning data collected in varied TYMS genetic backgrounds
KinaseAllosterySCA
SCA for the Eukaryotic Protein Kinases
pySCA
A python implementation of the Statistical Coupling Analysis (SCA)
titratableCRISPRi
code (iPython notebooks) used in analyzing titratable CRISPRi experiments
reynoldsk's Repositories
reynoldsk/pySCA
A python implementation of the Statistical Coupling Analysis (SCA)
reynoldsk/allostery-in-dhfr
Code that performs analysis of deep mutational scanning data for an allosteric DHFR-LOV2 fusion.
reynoldsk/CryptochromeSCA
SCA for the Cryptochrome (CRY)/Photolyase family.
reynoldsk/titratableCRISPRi
code (iPython notebooks) used in analyzing titratable CRISPRi experiments
reynoldsk/ContinuousEpistasis
Data analysis and code for Otto et al, "A continuous epistasis model for predicting growth rate given combinatorial variation in gene expression and environment"
reynoldsk/dhfr-tyms-epistasis
Analysis of DHFR deep mutational scanning data collected in varied TYMS genetic backgrounds
reynoldsk/KinaseAllosterySCA
SCA for the Eukaryotic Protein Kinases