reynoldsk

Evolutionary_Protein_Interaction_Conjecture

allostery-in-dhfr

Code that performs analysis of deep mutational scanning data for an allosteric DHFR-LOV2 fusion.

ContinuousEpistasis

Data analysis and code for Otto et al, "A continuous epistasis model for predicting growth rate given combinatorial variation in gene expression and environment"

CryptochromeSCA

SCA for the Cryptochrome (CRY)/Photolyase family.

dhfr-tyms-epistasis

Analysis of DHFR deep mutational scanning data collected in varied TYMS genetic backgrounds

KinaseAllosterySCA

SCA for the Eukaryotic Protein Kinases

pySCA

A python implementation of the Statistical Coupling Analysis (SCA)

titratableCRISPRi

code (iPython notebooks) used in analyzing titratable CRISPRi experiments

reynoldsk/pySCA

A python implementation of the Statistical Coupling Analysis (SCA)

reynoldsk/allostery-in-dhfr

Code that performs analysis of deep mutational scanning data for an allosteric DHFR-LOV2 fusion.

reynoldsk/CryptochromeSCA

SCA for the Cryptochrome (CRY)/Photolyase family.

reynoldsk/titratableCRISPRi

code (iPython notebooks) used in analyzing titratable CRISPRi experiments

reynoldsk/ContinuousEpistasis

Data analysis and code for Otto et al, "A continuous epistasis model for predicting growth rate given combinatorial variation in gene expression and environment"

reynoldsk/dhfr-tyms-epistasis

Analysis of DHFR deep mutational scanning data collected in varied TYMS genetic backgrounds

reynoldsk/KinaseAllosterySCA

SCA for the Eukaryotic Protein Kinases