/MsBackendMetaboLights

MsBackend allowing to retrieve MS data from the MetaboLights repository.

Primary LanguageRGNU General Public License v2.0GPL-2.0

Retrieve Mass Spectrometry Data from MetaboLights

Project Status: Active – The project has reached a stable, usable state and is being actively developed. R-CMD-check-bioc codecov :name status badge license

This repository provides a backend for Spectra objects that represents and retrieves mass spectrometry (MS) data directly from metabolomics experiments deposited at the public MetaboLights repository. Mass spectrometry data files of an experiment are downloaded and cached locally using the BiocFileCache package.

Installation

The package can be installed with

install.packages("BiocManager")
BiocManager::install("RforMassSpectrometry/MsBackendMetaboLights")

Contributions

Contributions are highly welcome and should follow the contribution guidelines. Also, please check the coding style guidelines in the RforMassSpectrometry vignette.