Some quick and dirty graphs for the US and for Washington by county, using the data published by NYT repository (https://github.com/nytimes/covid-19-data)
Main idea is to compare states at once, as well as counties in the state of Washington. For this, I used
- a simple linear count to see how they compare;
- a log(2) count to see what the doubling rate was like
Run from inside RStudio or from command line.
You'll need to know where pandoc is on your system to run from command line.
From RStudio console execute Sys.getenv("RSTUDIO_PANDOC")
On my MacOS system:
Rscript -e "Sys.setenv(RSTUDIO_PANDOC='/Applications/RStudio.app/Contents/MacOS/pandoc') ; rmarkdown::render('log-analysis.Rmd')"
and
Rscript -e "Sys.setenv(RSTUDIO_PANDOC='/Applications/RStudio.app/Contents/MacOS/pandoc') ; rmarkdown::render('log-change-analysis.Rmd')"
You could probably export the ENV variable as well. Or maybe I can add it to the script. we'll see.