rgyoung6

Pinned Repositories

MACER
Molecular Acquisition, Cleaning, and Evaluation in R (MACER) is an R package to assist biological researchers in assembling taxonomically and marker focused molecular sequence data set. MACER accepts a list of genera as a user input and uses NCBI-GenBank and BOLD as resources to download and assemble molecular sequence datasets. These datasets are then assembled by marker, aligned, trimmed, and cleaned. The use of this package allows the publication of specific parameters to ensure reproducibility. The MACER package has four core functions.
Language:R23
MACER_example
Example walk through for the MACER pacakge located at rgyoung6/MACER.
11
DBTCShiny
Dada-BLAST-Taxon Assign-Condense Shiny Application (DBTCShiny)
Language:R00
MDMAPR2.0
Molecular Detection Mapping and Analysis in R.
Language:R00
DBTCShinyTutorial
A step-by-step example on the use of the DBTCShiny package.
Language:Batchfile00
DBTC
Dada-BLAST-Taxon Assign-Condense
Language:R00
MDOP
Molecular Data Organization for Publication (MDOP) R package v1.0 assists in the standardization and upload of molecular sequence data and associated metadata files to centralized data repositories.
Language:R11
HACSim.R
Iterative extrapolation of species haplotype accumulation curves for genetic diversity assessment.
Language:R00
qMaPCR
Language:R00

rgyoung6's Repositories

rgyoung6/MDMAPR2.0
Molecular Detection Mapping and Analysis in R.
Language:R
rgyoung6/DBTCShiny
Dada-BLAST-Taxon Assign-Condense Shiny Application (DBTCShiny)
Language:R
rgyoung6/DBTCShinyTutorial
A step-by-step example on the use of the DBTCShiny package.
Language:Batchfile
rgyoung6/DBTC
Dada-BLAST-Taxon Assign-Condense
Language:R
rgyoung6/MDOP
Molecular Data Organization for Publication (MDOP) R package v1.0 assists in the standardization and upload of molecular sequence data and associated metadata files to centralized data repositories.
Language:R11
rgyoung6/MACER
Molecular Acquisition, Cleaning, and Evaluation in R (MACER) is an R package to assist biological researchers in assembling taxonomically and marker focused molecular sequence data set. MACER accepts a list of genera as a user input and uses NCBI-GenBank and BOLD as resources to download and assemble molecular sequence datasets. These datasets are then assembled by marker, aligned, trimmed, and cleaned. The use of this package allows the publication of specific parameters to ensure reproducibility. The MACER package has four core functions.
Language:R23
rgyoung6/MACER_example
Example walk through for the MACER pacakge located at rgyoung6/MACER.
11
rgyoung6/HACSim.R
Iterative extrapolation of species haplotype accumulation curves for genetic diversity assessment.
rgyoung6/qMaPCR