/RGS_geneBasis

This repository contains scripts to obtain results with geneBasis for the RGS manuscript.

Primary LanguageR

Environment:

install.packages(c("usethis","devtools","remotes","tidyverse"))
BiocManager::install("SingleCellExperiment")
devtools::install_github("MarioniLab/geneBasisR")
devtools::install_github("wesm/feather/R")

Experiments:

  1. Raw csv converted to feather format for quick read access:
library(feather)
df <- read.csv(csv_name, header = TRUE, sep = ",")
write_feather(df, feather_name)
  1. Individual scripts show the settings under which gene selections were obtained.
  2. Gene selections are available in the /data/ folder.