/topo-preserve-fastmarching

Primary LanguageMATLABMIT LicenseMIT

Demo:

load Demo.mat
[nonsimple,KT,D,T]=FastMarchingTopo(im,SVr,30,[1,1,1],true)

  • Green circles: Starting points SVr
  • Cyan squares: Visited points KT==1
  • Red crosses: non-simple points nonsimple

References:

  • Gala, Rohan, et al. Active learning of neuron morphology for accurate automated tracing of neurites." Frontiers in neuroanatomy 8 (2014): 37
  • Sümbül U, Song S, McCulloch K, Becker M, Lin B, Sanes JR, Masland RH, Seung HS. A genetic and computational approach to structurally classify neuronal types. Nature communications. 2014 Mar 24;5(1):1-2
  • G. Bertrand and G. Malandain. A New Characterization of three-dimensional Simple Points. Pattern Recognition Letters, February 1994, volume 2, number 15, pages 169-175.